Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06796 ATGGGTAACGCACACCGACATCACCCCAAACACCGTTTTCCCCTCCCTCACAACACGGTTCCCACTCCTCCACATAAATACCCCACCTCTAATCCTCCTCATAACCCACCAAACCATAACCAAGGTGGTTCCAATTCCAACACCGACATGATCTCTTTACCTTACACCAACGCCGACACCGCTCTCCGTTCCCTCGCCGCTCAAGCCGAAGGCTACGGCCGCTTCGCAATCGGCGGACTTCATGGCTCTCTTTATCACGTCACATCACTCTTAGATGATGGACCGGGATCATTGCGTGAGGCGTGTCGCCAAAAGGAACCTTTGTGGATTGTGTTTGAGGTTTCGGGTACGATTCATCTTTCGTCTTACTTGAGTGTGTCATCTTATAAGACAGTTGATGGGAGGGGGCAAAGGGTTAAGCTGACTGGAAAGGGTTTTAAGCTGAAGCAATGTGAACATGTGATTATTTGTAATATGGAGGTGGAAGGAGGTAGAGGGCATGATGTTGATGCTATTCAGATCAAACCTAATTCTAAACATATATGGATAGATCGTTGTACTTTGAGTGATTGTGAAGACGGGCTCATTGATATTACTCGAGGTAGCACTGAAATTACTATTTCAAGGTGTCATTTTCATAATCATGACAAAACAATACTCATTGGATCAGATCCCTCACATGTTGATGATAGATGCATAAAAGTCACCATACACCACTGTTTTTTCAACGGTACTCGACAGAGGCATCCTCGTGTTAGGTTTGCCAAAGTACATCTGTACAATAATTACAGCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTTGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCGGGCCAGAAGAAGATTGCGTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGTCACATAATCTCTGAAGGGGACTTATTTTTAAATGGTGCTCAACCAGGGTTGATGACAGGGAATGTTGTGGTTAAAGTGTTTCATCCGAGTGAACACTATCACACATGGACAGTGGAACCTCCAACAGATGATCTAAAGCAAGTTCTTCAACACTGTACTGGATGGCAATCTGTTGTGCGGCCAGCGGATCAAACCGTTTGTGCAGAATAG 1146 0.4468 MGNAHRHHPKHRFPLPHNTVPTPPHKYPTSNPPHNPPNHNQGGSNSNTDMISLPYTNADTALRSLAAQAEGYGRFAIGGLHGSLYHVTSLLDDGPGSLREACRQKEPLWIVFEVSGTIHLSSYLSVSSYKTVDGRGQRVKLTGKGFKLKQCEHVIICNMEVEGGRGHDVDAIQIKPNSKHIWIDRCTLSDCEDGLIDITRGSTEITISRCHFHNHDKTILIGSDPSHVDDRCIKVTIHHCFFNGTRQRHPRVRFAKVHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKIAFKYLHEKAADKEAEATGHIISEGDLFLNGAQPGLMTGNVVVKVFHPSEHYHTWTVEPPTDDLKQVLQHCTGWQSVVRPADQTVCAE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06796 381 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Vivi1g06796 381 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Vivi1g06796 381 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Vivi1g06796 381 SMART amb_all 115 293 IPR002022 -
Vivi1g06796 381 Pfam Pectate lyase 124 286 IPR002022 -
Vivi1g06796 381 Gene3D - 31 355 IPR012334 -
Vivi1g06796 381 SUPERFAMILY Pectin lyase-like 68 376 IPR011050 -
Vivi1g06796 381 PANTHER PECTATE LYASE 18-RELATED 55 326 IPR045032 GO:0030570
Vivi1g06796 381 MobiDBLite consensus disorder prediction 36 51 - -
Vivi1g06796 381 MobiDBLite consensus disorder prediction 16 35 - -
Vivi1g06796 381 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06796 Vivi-Chr1 160545679 160548255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06796 90 378 Polysaccharide Lyase AT3G55140 75.087 2.59e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06796 K01728 - gmx:100814368 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06796 1 160545679 160548255 Vivi1g06796 1 160545679 160548255 ECH