Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06786 ATGATGAAGAGACAGAGAGAAAATGAAGTAAATAAAGAGAGCATGGATTTAGCAACAAGTCTAATGCTACTGTCTTCTTATCGTACCCATCAACACCAAAAGAACAAAACATATTTACAAGATCAGTTTGAGTGCAAAACATGCAACCGCAAATTCTCATCTTTTCAAGCACTCGGTGGTCATAGGGCAAGTCACAAGAAACTCAAACTTGTAGGAGATGAAACACACAAGGGGTATGATCATACAAATAAGCAACCGAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACATATGAGAAGGCATAGAATTAATAATGAACAATTTTCTTCCTCTTCTTTGAATCATCAAGTGATAACAAAATCTTCTCCTGGTTTGAAAAGATCGAATAGTATAAGGGTTATGTTTTTGGAACTTGACTTGAATTTGACACCTTTAGAAAATGATTTGAAGATGTTGTTTGGAAATAAAGCACCACAAGTAAATGTCTCTTTGTTTTGA 528 0.3485 MMKRQRENEVNKESMDLATSLMLLSSYRTHQHQKNKTYLQDQFECKTCNRKFSSFQALGGHRASHKKLKLVGDETHKGYDHTNKQPKMHKCSICGQEFKLGQALGGHMRRHRINNEQFSSSSLNHQVITKSSPGLKRSNSIRVMFLELDLNLTPLENDLKMLFGNKAPQVNVSLF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06786 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vivi1g06786 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vivi1g06786 175 PANTHER ZINC FINGER PROTEIN ZAT5 2 158 - -
Vivi1g06786 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vivi1g06786 175 SUPERFAMILY beta-beta-alpha zinc fingers 42 111 IPR036236 -
Vivi1g06786 175 Gene3D Classic Zinc Finger 41 111 - -
Vivi1g06786 175 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vivi1g06786 175 SMART c2h2final6 89 111 IPR013087 -
Vivi1g06786 175 SMART c2h2final6 43 65 IPR013087 -
Vivi1g06786 175 Pfam C2H2-type zinc finger 89 112 - -
Vivi1g06786 175 Pfam C2H2-type zinc finger 43 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06786 Vivi-Chr1 160108519 160109266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06786 2 172 C2H2 Transcription Factor Family AT3G53600 48.045 3.39e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g06786 zf-C2H2_6 3.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06786 - - cam:101495964 219.55