Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06767 ATGGCGGCATCTCGGCGTCTCCGGGAGCTGCAATCCCAACCCGGCAACAAGATCTGCGTCGACTGCTCCCAGAAGAATCCACAATGGGCTTCAGTCTCCTACGGCATCTTCATGTGCCTTGAGTGCTCCGGCAAGCACCGAGGCCTCGGAGTCCACATCTCCTTCGTCCGATCTGTCACCATGGATGCCTGGTCCGATATCCAAATCAAGAAAATGGAAGCCGGTGGTAACGACAGTCTTAACAACTTCCTCGCACGGTATTCGATTCCGAAGGAAACCGATATCGTTACCAAGTATAACACCAACGCTGCTTCGGTTTATCGTGACAGGATTCAGGCGATTGCTGAAGGTCGATCGTGGCGCGATCCGCCGGTTGTTAAGGAGAATATTGGTTCCGGGACCGGAAGTAAGGGGAGGCCGCCGATGTCACAGGCTCGCCGGAGTAATGATTCCGGATGGGATGATTGGGGTAGAGAGGGAAATTCTGGAGGTTCGGTTGATGTGAGGAGTAAGTCGACTGGGGATTTTAGAAGCTTGAACGGTGGTGGTGCGCCGTCGAGATCGAGGTCGACGGAGGATATTTATACTCGGTCACAGTTGGAGGCGTCTGCGGCGAATAAGGAGGGTTTCTTCGCGAAGAGGATGGCGGAGAATGAGTCGCGACCGGAGGGACTGCCTCCGTCTCAGGGTGGGAAGTATGTTGGATTTGGATCCAGTCCTGCGCCTTCTTCGCAGCGGAGTAATCCGCAAAACGATTATTTCTCTGTCGTTTCGCAGGGGATTGGTAAGTTGTCATTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTGGCACGAAAGAGATCACTTCTAAGGTCAAGGATGGTGGTTATGATCAAAAGGTCAACGAAACTGTTACTGTTGTCACTCAAAAGACATCCGAGATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTATACTAAAGAAAACTCAGATTGGAAGGCTGATAACTGGCAACGAAACGAGAGTGGTAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCAGTAATTCTTCTACTGGAAGAGAACAGTCTTCATCAGGGCAATTCAAAACTCACAGCTCAAACTCTTGGGATGATTGGGACCAGAAAGATAGTTTAAAGGTAGAACCAACTAAAGGATCCACTCCTTATTCATCTGGTGGGCAGTCTGGTAGTCACAATCCAAGCTCTTGGGATGACTGGGACCACAAAGATTCTAGCAAGGAAGTACCAGCTAAAGGATCGGCTCCGCATAATAGCGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAACTTCTATGAAGGTGCATCTAATAAGAAAATTGTTGGACATAATGGGAAATCTGATGACGCTTGGACTGGGGGTGGCTTTCTCTAA 1461 0.4935 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSDIQIKKMEAGGNDSLNNFLARYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRSWRDPPVVKENIGSGTGSKGRPPMSQARRSNDSGWDDWGREGNSGGSVDVRSKSTGDFRSLNGGGAPSRSRSTEDIYTRSQLEASAANKEGFFAKRMAENESRPEGLPPSQGGKYVGFGSSPAPSSQRSNPQNDYFSVVSQGIGKLSLVAASAANVVQAGTKEITSKVKDGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSDWKADNWQRNESGRNGYYQDFNQENKGSNSSTGREQSSSGQFKTHSSNSWDDWDQKDSLKVEPTKGSTPYSSGGQSGSHNPSSWDDWDHKDSSKEVPAKGSAPHNSDAGWAGWDNAKDDGFDNFYEGASNKKIVGHNGKSDDAWTGGGFL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06767 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 402 IPR044519 GO:0005096|GO:0016192
Vivi1g06767 486 Pfam Putative GTPase activating protein for Arf 5 103 IPR001164 GO:0005096
Vivi1g06767 486 MobiDBLite consensus disorder prediction 216 251 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 332 462 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 419 433 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 467 486 - -
Vivi1g06767 486 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Vivi1g06767 486 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Vivi1g06767 486 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Vivi1g06767 486 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Vivi1g06767 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Vivi1g06767 486 MobiDBLite consensus disorder prediction 118 194 - -
Vivi1g06767 486 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Vivi1g06767 486 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 345 384 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 398 418 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 136 150 - -
Vivi1g06767 486 MobiDBLite consensus disorder prediction 165 194 - -
Vivi1g06767 486 CDD ArfGap_ArfGap1 3 117 - -
Vivi1g06767 486 Coils Coil 321 341 - -
Vivi1g06767 486 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06767 Vivi-Chr1 158979313 158982554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06767 5 87 C2H2 Transcription Factor Family AT4G05330 50.000 4.25e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06767 K12492 - gmx:100792658 794.653