Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06735 ATGAATCACTGTGTTCCAGATTTCGATTTCCAAATCAACGACCATGAAGTAAACCCTGTGACTCTCTCAAAGAAACCTTCCGCTGGGCGAAACAATGAGATCATGGAACTTTTATGGCAAAACGGTTCAGTCGTGATACACAACCAAAGCCACCGTGAATCTAAGAAACCGCCATCGCCGGTAACTAACACCGGCCATGAAATAACTCCTGATCAAAGAGAGATTCGATCCTCAGATGCAGAAAACTATAATATGAACCAACACTTGTTCATGCAAGAAGATGAAATGGCAGCGTGGCTTTTCGATTCGATCAATAAAGATCCTTCGATCAACACTGAAACACTTTATCATCCATCCAATGGTGTTATACTACAAGGCTCTGTAGTTCAGCCTCAGCCTGAGCAGTTACTTCAGCCACAGAGACCAACGGCTTCTCGGCCTTCGATTCATCCGGCGAGGAAGGAGAATCAAGTGTTGAGTAATAAACATAATAATTTTGCATATTTTGCCAACCACATCAATGTGCTGATGGAACCAAGTATGACTTCAAATTCCATGATTCCGGCGGTGCAAGAAACAACGATGGTGGATTCATGCGATACACCCATGATGACGGCGGAGAAAACTTATTCAGCTACGAAGCTATCCGAAACAACCACGAGCACCACGTACACAGACTGCATAAGTGTGAGTGTTAGCACTGCCGAAAAAGCGGCGGCATATATTGGATGTGGTACTGCAAGCACTGCTAAAACTACAACTACTAATGGAGTAAGAGAGAAAACGATGTTGGATATTACAATGACGTCATCTCATAACTGTTCAACTGGGAGTGGTGATTCGATTCAGAGAAAACTGGAGTTAGAGCGAAAGAGGAAAAGTAAAAATCGTGTATCAGACAAATCCGAGTTTCAGAGTCAGGAAGGAAAAAAACAAGTTGGTGGATCTCCCTCTACAAAGAGATCCCGCGCTGCCGAGATTCATAATCTCTCAGAGAGGAAGCGTCGAGATAAAATCAACGAAAAGATGAAAGCTCTTCAAGAACTTGTACCCCATTGCAACAAGTCCGACAAAGCTTCAATGCTGGATGAAGTCATCGAACACATGAAGTCATTGCAGTTGCAAGTGCAGACGTTGTCCATGGCATGTGGCATGATGCCGATGTTTCCTGGTATGCAGCAGTATATGCCAGCGATGAGTATGGGAATGGGCATGGGGATGGGAATGAGTTTGGGGATGGAAATGGGAATGAACAGACCACCAACAACAACAGCAATAGCTACTCCCTATGGACCACCAAGGTTCCCTATGCCTCCTTTTCATGTGCCTCATGTTCCAAATCCTGCATCACCGGAATCTTCGTCGCTAACTCATTCAGATCTCCCCGTTGACTCCCTCGGTACTCTGATTGATCCTGATCAGTCACCCATCCCAAACACTAACTTCACTGATCCTTATCAGCAATTTCCTCACCAGGTGCAGCAGTTAATGCAGGGAATGAACCTTCAAAATGTCAACAGGCCAGGTAACAGTGGGGGCCAGGATAATCCAGAAAAGCATCATGCAGGATAG 1572 0.4491 MNHCVPDFDFQINDHEVNPVTLSKKPSAGRNNEIMELLWQNGSVVIHNQSHRESKKPPSPVTNTGHEITPDQREIRSSDAENYNMNQHLFMQEDEMAAWLFDSINKDPSINTETLYHPSNGVILQGSVVQPQPEQLLQPQRPTASRPSIHPARKENQVLSNKHNNFAYFANHINVLMEPSMTSNSMIPAVQETTMVDSCDTPMMTAEKTYSATKLSETTTSTTYTDCISVSVSTAEKAAAYIGCGTASTAKTTTTNGVREKTMLDITMTSSHNCSTGSGDSIQRKLELERKRKSKNRVSDKSEFQSQEGKKQVGGSPSTKRSRAAEIHNLSERKRRDKINEKMKALQELVPHCNKSDKASMLDEVIEHMKSLQLQVQTLSMACGMMPMFPGMQQYMPAMSMGMGMGMGMSLGMEMGMNRPPTTTAIATPYGPPRFPMPPFHVPHVPNPASPESSSLTHSDLPVDSLGTLIDPDQSPIPNTNFTDPYQQFPHQVQQLMQGMNLQNVNRPGNSGGQDNPEKHHAG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06735 523 MobiDBLite consensus disorder prediction 501 523 - -
Vivi1g06735 523 MobiDBLite consensus disorder prediction 289 307 - -
Vivi1g06735 523 FunFam Basic helix-loop-helix transcription factor 318 381 - -
Vivi1g06735 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 390 IPR036638 GO:0046983
Vivi1g06735 523 PANTHER TRANSCRIPTION FACTOR PIF3 21 511 IPR044273 GO:0003700|GO:0006355
Vivi1g06735 523 SMART finulus 329 378 IPR011598 GO:0046983
Vivi1g06735 523 MobiDBLite consensus disorder prediction 308 324 - -
Vivi1g06735 523 MobiDBLite consensus disorder prediction 289 338 - -
Vivi1g06735 523 CDD bHLH_AtPIF_like 323 386 IPR047265 -
Vivi1g06735 523 Gene3D - 318 381 IPR036638 GO:0046983
Vivi1g06735 523 MobiDBLite consensus disorder prediction 49 73 - -
Vivi1g06735 523 Coils Coil 329 349 - -
Vivi1g06735 523 Pfam Helix-loop-helix DNA-binding domain 328 373 IPR011598 GO:0046983
Vivi1g06735 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06735 Vivi-Chr1 157799422 157804762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06735 1 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 36.061 6.97e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g06735 HLH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06735 - - psat:127097244 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06735 1 157799422 157804762 Vivi1g06735 1 157799422 157804762 ECH
Vivi6g03779 6 132970595 132975783 Vivi1g06735 1 157799422 157804762 PCT