Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06708 ATGTCGCGGCGGAAGGAGCAAGAGAAAGAGATGGAGGGAGTGGTTTCGTTTGCAGGAGCTGGAAACTCGAGTAAGTATAAGAAACGAAATTTTGGTCTTTTGATTTTAATTGAAAGGCTGGGTTTGGTTCTTATACCTGCTCTAATACTAACCTTGACTCTTCCGTTTTTGCGGAATGAAGATTATTGGGAGGTTAGTATTTGGAAATGGGAAATCATGATTCTGTTTTTAGTCTCGGGTCGGTTATTGTGGCGTTCTATCATTAGGATTATTGTGTTTTGGATTCAAAGAAAATTTCAATGGAAGATCAAGGTTCTTTACTATGTATATGCTTTGAAGAAAACAGTTCAGAATTATATATGGTTATTGATACTTTATTTAGCATGGTCTTTCTGGTTCCGGCTGATCAACACTGATTTGAAAGATTTGGAGACAGCTCTGTTCTGTTCTTTTCAGGCTCTTTCATTATGGCTCTTCAAAACCTTAATTGCTAAAGTGTTAACCACTCATTATTATTTGACAACATATTTCGGCAACATTGAAGAGTCGATCAACAATCTCTTATGGATTAATATGCTTTCTGGATCACATATGGTAAAAATTCAAAAGACTAAAGCACAAGAGGAGGAAAGGCGTGCTGCTTGTAACTTGTCTAACATCACAATTGAAAGGCCAAGGAGTGAGATTGAATATGGTGGTGGAATATCTTTCAATATTTTGTCTAAGCTGAATCCAAAATTTGTGTCTTCTTTAGAAATGAAGAGCTTAATAAAAACATTCACCTACAGAGCACTTGATTTGGAAGACGACCATTCCGCATTAGTCACAACTGAAAAGGAGGCTAAAGCAGCAACCGAACAAATATTCAGAAATATTGCTATATGTGGTTCCAACTCCAAGTATATAGACATTGAGGACTTGATGCCTTTTATGATTGAAAGTCAAGCTTCTCAAATTGTAAATCACCTTAAAGGGGCATCAGATTCTGGAAAAATAAGTCAAACTGCCTTGAAAGACTGGATTCTGAATGTGTTATGGGAGAGAAGAACACTTATTTTAAAAATAAATGACACCAAATCACCGGTCCCAAAGTTATACAACTTGTTGAACTTCTTAACTGTCCTTGAGATTTTTGTTCTAACGATTTTGATTTTGATTTGGGAAATGGTCACTACCAAAACCCTTGCCGTTATTGGGTCACAGTTCGTGGTTGCATACATATTGAAAAACACATTGACCGCTGCTTTTAAAGGAATATGTTTTGTTTTCTTAAAACATCCCTATGATGTAGGAGATAGATGTGTCATCGATGATACAGAACTTGTTGTTGAAGAAATAAACTTACTGCATACTGTGTTTATATCGTTCGAACAACAACTCATAACCATACCCAACAGCGAACTTAGCAAGAAAGTCATACTTAATCATAATCATAGTCCTGAATTGGAAGAGCCTCTGCAATTTTATATTGATGTATCAACTCCCGATGAAAAAGTTTTAATGTTGAAACATAGAATAAAGAATTACATGGACAGAAAGCCAGATCAGTGGTATCCTTCACCTACCATAACCATGGATTATCTGGAAAAATTAGGCAAGGTAAAAGTGGTTGTCTGGCCAACTCTGAGAATGAACTTCGTAGGCATGAGAGAAAGAGGCATCAGGAGATCTATGTTGATAGAAGAGTTGATGAAGATCTTAAGGGATCTTGATATTCTATACTTTATGCCTCTAGAGGTAAATTGTCTCCCTGTTAGTTGTTGA 1764 0.3634 MSRRKEQEKEMEGVVSFAGAGNSSKYKKRNFGLLILIERLGLVLIPALILTLTLPFLRNEDYWEVSIWKWEIMILFLVSGRLLWRSIIRIIVFWIQRKFQWKIKVLYYVYALKKTVQNYIWLLILYLAWSFWFRLINTDLKDLETALFCSFQALSLWLFKTLIAKVLTTHYYLTTYFGNIEESINNLLWINMLSGSHMVKIQKTKAQEEERRAACNLSNITIERPRSEIEYGGGISFNILSKLNPKFVSSLEMKSLIKTFTYRALDLEDDHSALVTTEKEAKAATEQIFRNIAICGSNSKYIDIEDLMPFMIESQASQIVNHLKGASDSGKISQTALKDWILNVLWERRTLILKINDTKSPVPKLYNLLNFLTVLEIFVLTILILIWEMVTTKTLAVIGSQFVVAYILKNTLTAAFKGICFVFLKHPYDVGDRCVIDDTELVVEEINLLHTVFISFEQQLITIPNSELSKKVILNHNHSPELEEPLQFYIDVSTPDEKVLMLKHRIKNYMDRKPDQWYPSPTITMDYLEKLGKVKVVVWPTLRMNFVGMRERGIRRSMLIEELMKILRDLDILYFMPLEVNCLPVSC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06708 587 Pfam Mechanosensitive ion channel 374 521 IPR006685 GO:0016020|GO:0055085
Vivi1g06708 587 Gene3D - 427 476 IPR023408 -
Vivi1g06708 587 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 22 582 IPR016688 -
Vivi1g06708 587 SUPERFAMILY Sm-like ribonucleoproteins 416 476 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06708 Vivi-Chr1 156111865 156114174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06708 27 581 Mechanosensitive Ion Channel Family AT1G53470 36.808 1.04e-120 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06708 K22048 - vvo:131626026 620.542