Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06707 ATGCAGGTCAAGGACGTGGTCATCAATATTGACGAAAACCGTGAAATGTCTGAAATCCAATGGGAGAATGTTCAAACAAGCTTTGTTGGAGAGTCCAGCTCTAATGCCCAATCATCTCTCAAAGATGAGAATCACTCAAGTGAAATATCTGAAATCAAAGGGGAGACTGTTCAAACAAGCTTTGTTGGAGAGTCCAGCTCTAATGCTCAATCATCTCTCATAAATGAGAATCACTCAAGTAAGTATAAGAAAAGAAAATCTAGTCTTTTGATTTTATTTGGAAGGCTAGGTTTGATTCTTATACCTGCTTTATTATTAACCTTGACTTTTCGGTATTTGTGGAATATGAATTTATGGGAGGTTAGACTTTGGAAATATGAAGTCATAATTCTTTTTCTAGTCTCTGGTAGTTTCTTGTCGCATTGTATTATTAGGATTATCATTGTGTTTTTTATTCAAAGAAAATTTCATTTGGAGATCAAACTTGTTTACTATGTATATACTTTGAAGAAAACAATTCAAAATTTTTTGTGGTTGCTACTTTTAGCATGGTCTTTGTGGTTCTATAAGCCTCTTCACAGGGCGGTGATCTGCGTTTTAATGCTATACATGGAGAAAGACATGTTCAGCAGTTTATTTTTGGCTCCTGCATTATGGATCTTCAAAACCCTAATTGCTGAAATTTTAACCACTCATTTTTACGCGATAGCATATTGCGGTAAGATTGAAGAGTCGATCGTTAATCACTCATTGATTAATATGCTTTCCGGACCATATATGGTCGAAATTCGAAGGGCTAAAGCACAAGAGGATGAAAGACTGGCTGCTCGTAACTTTTCTACCATCATAATTGAAAGGTCAAGGAGTGAGATTGAATATGGTGGTAGACTAACTCTCAATCTTTTGCATAAGCTGAATCCAAAATTTGTGTCGTCTTTGGAAATGAATAGCTTAATGAAAACATTTACCTACAGAGCATTTGATTTGGAAGACAACCATTCCGCATTAGCCTCAACTGAAAAGGAGGCTAAAGCAGCAACCGAACAAATATTCAGAAATCTTGATTTGTGTGGTTCCAGGTCTATAGAAATTGAGGACTTGATGTCTTTCATGATTGAAACTGAAGCTGCTCAAATTGTAAATCACTTTAAAAGAGGATCAAATTCTGGAAAAGTAAGTCAAACTTCCTTGAAGGACTGGATTCTGAGTGTGTTCAGGGAGAGAAGAACGCTTAGTTTAAGAATAAATGATACCAAATCACCGGTCCCAAAGTTATACAACTTCTTTAACTTCTTAGTTGTCCTTCTTATTTTTGTTATATCGATTTTTATTTTGGAAATGGTCACTATCAAGTCACTTGGCTTTGTTTTTGCGTCACAGTCCGTGTTCGCTTCATTGATATTCGGAATCTCATTGAAAACTGCTTTTGAAGGAATATTTTTTGTTCTTATAATGCATTACTATGATGTAGGAGACAAATGTGTGATTGACGACATTGTAATGACCATGGAGAAGATCAACATACTGACTACCGTGTTTATACGGTTCGATAAAAAACGGATAAGCATGCCCAGCAGTGTGCTTGACAAGAAAAAAATACGTAATTGCAATCGTTGTACTAACATGGAAAAGGCTTTGCAATTCTGTATTCACATAGCAACTCAAAATGATAAAGTTTTCCTCATGAAACAGAGAATAAAAGACTTCATGGAAGGAAAGCTAGAGTATTGGCATCCTTCACCTACTATAAAGTTGTATGATAATGAAATGTTGGACATGGTAAAAGTGGTTGTGTGGCCAACTTTCAGAAAGAACATACAAAACATGGAAGAAAGTTGCATCATGAGGTCTTTGTTGATTGAAGAGTTGATGATGATCTTTAGAGATCTTGAAATTGTTTACTGGATGCCCCTAAACTTCAAAGCTTTTCCTATTACTCACGATTGTCTCCCAGTTAGTTTTTGTTAG 1968 0.3567 MQVKDVVINIDENREMSEIQWENVQTSFVGESSSNAQSSLKDENHSSEISEIKGETVQTSFVGESSSNAQSSLINENHSSKYKKRKSSLLILFGRLGLILIPALLLTLTFRYLWNMNLWEVRLWKYEVIILFLVSGSFLSHCIIRIIIVFFIQRKFHLEIKLVYYVYTLKKTIQNFLWLLLLAWSLWFYKPLHRAVICVLMLYMEKDMFSSLFLAPALWIFKTLIAEILTTHFYAIAYCGKIEESIVNHSLINMLSGPYMVEIRRAKAQEDERLAARNFSTIIIERSRSEIEYGGRLTLNLLHKLNPKFVSSLEMNSLMKTFTYRAFDLEDNHSALASTEKEAKAATEQIFRNLDLCGSRSIEIEDLMSFMIETEAAQIVNHFKRGSNSGKVSQTSLKDWILSVFRERRTLSLRINDTKSPVPKLYNFFNFLVVLLIFVISIFILEMVTIKSLGFVFASQSVFASLIFGISLKTAFEGIFFVLIMHYYDVGDKCVIDDIVMTMEKINILTTVFIRFDKKRISMPSSVLDKKKIRNCNRCTNMEKALQFCIHIATQNDKVFLMKQRIKDFMEGKLEYWHPSPTIKLYDNEMLDMVKVVVWPTFRKNIQNMEESCIMRSLLIEELMMIFRDLEIVYWMPLNFKAFPITHDCLPVSFC 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06707 655 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 638 IPR016688 -
Vivi1g06707 655 SUPERFAMILY Sm-like ribonucleoproteins 476 536 IPR010920 -
Vivi1g06707 655 Pfam Mechanosensitive ion channel 431 630 IPR006685 GO:0016020|GO:0055085
Vivi1g06707 655 ProSiteProfiles EF-hand calcium-binding domain profile. 342 377 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06707 Vivi-Chr1 156088669 156090636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06707 81 644 Mechanosensitive Ion Channel Family AT2G17000 37.025 1.58e-113 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06707 K22048 - gmx:102665658 402.519