Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06706 ATGCAGGTTAAGGACGTGGTTATTAATATTGACGAAAACCGTGAAATGTCTGAAATCCAAGGGGAGAATGTTCAAACAAGCTTTGTTGGAGAGTCCAGCTCTAATGCCCAATCATCTCTCAAAGATGAGAATCACTCAAGTGAAATATCTGAAATCAAAGGGGAGACCGTTCAAACAAGCTTTTTTGGAGAGTCCAGCTCTAATGCTCAATCATCTTTCATAAATGAGAATCACTCAAGTATGTATAAGAAAAGAAAATTTAGTCTTTTGATTTTATTTGGAAGGCTAGATTTGATTCTTATACCTGCTTTATTATTAACCTTGACTTTTCGGTATTTGAGGAATATGAATTTATGGGAAGTTAGACTTTGGAAATATGAAGTCCTGATTCTTTTTCTAGTCTCTGGTAGCTTCTTAGCGCATTGTATTATTAGGATTATCATTGTGTTTTTTATTAAAAGAAAATTTCATTTGGAGATCAAACTTGTTTACTATGTATATACTTTGAAGAAAACAATTCAAAAATTTTTGTGGTTGCTACTTTTAGCATGGTCTTTGTGGTTCTATAAGCCTCTTCACAGGGAGGTGATCTGCGTTTTAATGCTATACATGGAGAAAGCTTTGTTCAGCAGTTTATTTCTGGCTCCTGCATTATGGCTCTTCAAAACCCTAATTGCTGAAATTTTAACCACTCATTTTTATGCGACAGCATATTGCGGTAAGATTGAAGAGTCGTTCGTCAATCACTCATTGATTAATATGCTTTCTGGACCACATATGGTCGAACTTCGAAGGGCTAAAGCACAAGAGGATGAAAGGCTGGCTGCTCCTAACTTTTCTACCATCATAATTGAAAGGTCAAGGAGTGAGATTGAATATGGTGGTAGACTAACTCTCAATCTTTTGCATAAGCTGAATCCAAAATTTGTGTCGTCTTTGGAAATGAATAGCTTCATGAAAACATTTACCTACAGGGCATTTGATTTGGAAGACGACCATTCTGCACTAGCTTCAACTGAAAAGGAGACTAAAGCAGCAACCGAACAAATATTCAGAAATCTTGATTTATGTGGTTCTAGGTCTATAGAAATTGAGGACTTGATGTCTTTCATGATTGAAACTGAAGCTGCTCAAATTGTAAATCACTTTAAAAGAGGATCAGATTCTGGAAAAGTAAGTCAAACTGCCTTGAAGGACTGGATTCTGAGTGTGTTCAGGGAGAGAATAACACTTAGTTTAAGAATAAATGATACCAAATCACCGGTCCCAAAGTTATACAACTTCTTGAACTTCTTAGTTGTCCTTCTCATTTCTGTTATATCGATTTTGATTTTGGAAATGGTCACTATCAAGTTACTTGGCTTTGTTTTTGCGTCACAGTTCGTGTTCGCTTCATTGATATTCGGAAGCTCATTGAAAACTGTTTTTGAAGGAATATTTTTTGTTTTTATAATGCATTACTATGACGTAGGAGACAAATGTGTGATCGACGACATTGTAATGACCGTGGAGAAGATCAACATACTGACTACCGTGTTTATACGGTTCGATAAAAAACGGATAAACATGCCCAACAGTGTGCTTCACAAGAAAAAAATACGTAATTGCAATCGTTGTACTAACATGGAAAAAGCTTTGCAATTCTGTATTCACATAGCAACTCAAAATGAAAAAGTTTTCCTCATGAAACAGAGAATAAAAGACTTCATGGAAGGAAAGCTAGAGTATTGGCATCCTTCACCTACTATAAAGTTGTATGATAATCAAATGTTGGACATGGTAAAAGTGGTTGTGTGGCCAACTTTCAGAAATAACATACAAAACATGGAAGACAGGTGCATCATGAGGTCTTTGTTGATTGAAGAGTTGATGATGATCTTTAGGTATCTTGAAATTGTTTACTGGATGCCCCTAAACTTCAAAGCTTTTCCTATTACTCAAGATTGTCTCCCAGTTAGTTTTTGGACAACAACTACAAAGTAG 1983 0.357 MQVKDVVINIDENREMSEIQGENVQTSFVGESSSNAQSSLKDENHSSEISEIKGETVQTSFFGESSSNAQSSFINENHSSMYKKRKFSLLILFGRLDLILIPALLLTLTFRYLRNMNLWEVRLWKYEVLILFLVSGSFLAHCIIRIIIVFFIKRKFHLEIKLVYYVYTLKKTIQKFLWLLLLAWSLWFYKPLHREVICVLMLYMEKALFSSLFLAPALWLFKTLIAEILTTHFYATAYCGKIEESFVNHSLINMLSGPHMVELRRAKAQEDERLAAPNFSTIIIERSRSEIEYGGRLTLNLLHKLNPKFVSSLEMNSFMKTFTYRAFDLEDDHSALASTEKETKAATEQIFRNLDLCGSRSIEIEDLMSFMIETEAAQIVNHFKRGSDSGKVSQTALKDWILSVFRERITLSLRINDTKSPVPKLYNFLNFLVVLLISVISILILEMVTIKLLGFVFASQFVFASLIFGSSLKTVFEGIFFVFIMHYYDVGDKCVIDDIVMTVEKINILTTVFIRFDKKRINMPNSVLHKKKIRNCNRCTNMEKALQFCIHIATQNEKVFLMKQRIKDFMEGKLEYWHPSPTIKLYDNQMLDMVKVVVWPTFRNNIQNMEDRCIMRSLLIEELMMIFRYLEIVYWMPLNFKAFPITQDCLPVSFWTTTTK 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06706 660 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 639 IPR016688 -
Vivi1g06706 660 Pfam Mechanosensitive ion channel 431 629 IPR006685 GO:0016020|GO:0055085
Vivi1g06706 660 SUPERFAMILY Sm-like ribonucleoproteins 477 536 IPR010920 -
Vivi1g06706 660 Gene3D - 488 535 IPR023408 -
Vivi1g06706 660 ProSiteProfiles EF-hand calcium-binding domain profile. 342 377 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06706 Vivi-Chr1 156068546 156070528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06706 82 644 Mechanosensitive Ion Channel Family AT2G17000 38.245 2.86e-118 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06706 K22048 - gmx:102665658 412.92