Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06676 ATGCAGTTGAAAAATCAGTTTTTCTTCTTATTATTCATCTGTTGCATTTTCTGTTTCCATTCTAGCTTTTCTGCTGCAGAAAACAATGAAGCATCTGCATTACTTTCTGTCAAAGCAGGTCTCATTGATCCATTGAATAGTTTTCATGACTGGAAGGTTACAGGTGCAGCTCAAGCTCATTGTAACTGGACAGGTGTCGAATGCAACTCGGCCGGAGCTGTAGAGAAGCTTAATCTCTCACACATGAATCTTAGTGGAAGTGTTTCCAATGAGATACAAAGTTTGAAAAGTCTAACTTTTTTAAACTTGTGCTGCAATGGATTTGAGTCATTACTGTCTAAACACATAACCAATCTTACTTCACTCAAGAGTCTCGACGTAAGCCAGAATTTCTTCACCGGGGACTTTCCGTTAGGCCTTGGAAAGGCGTTGGGACTTGTCACGCTGAATGCATCGAGCAACAATTTCTCAGGTTTTCTTCCTGAGGACCTTGGGAATGTCTCTTCCTTGGAGATACTTGATCTAAGGGGAAGTTTCTTTGAAGGTTCTATTCCTAAGTCCTTATGTAACTTGAGTAAGTTGAAGTTCCTTGGTCTATCAGGAAATAATCTCACCGGGAAAATCCCGGTTGAGATTGGAAAGCTTTCGTCGCTGGAGTCTATGATCATTGGTTATAACGAATTTGAAGGCGGTATTCCAAAAGAGTTTGGAAATTTAACCAAGCTGAAGTATCTTGATTTAGCAGAAGGCAATTTTAGTGGTGAAATTCCTGCTGAGTTGGGAAAGCTCAAGTTATTGAACACAGTTTTCTTATACAAGAACAGTTTTGAAGGAAAAATTCCACCAACTATTGGAAACATGACTTCATTGATGCTGTTGGATCTCTCAGATAACATGTTATCTGGAAACATTCCGGACGAGATTAGTCGGCTGAAGAACTTGCAGCTTCTGAATGTCATGAGGAACAAGCTATCTGGTCCTGTACCTGCTGGCCTTGGAGATTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAACTCCTTCTCGGGGCCATTGCCTAGTGACCTCGGCAAGAATTCGCCATTGCAGTGGTTGGACGTTTCGTCCAATTCACTTTCTGGCGAAATTCCAGAAACCCTTTGCACTAAGGGAAATCTCACCAAGCTTATACTTTTCAACAATGCCTTCAAGGGTCCAATTCCAACAAGCCTATCAAAATGTCCCTCGCTCGTTCGCGTTCGGATTCAAAACAACTTTCTTTCTGGTACAATCCCTGTTGGTTTTGGTAAGCTTGGGAAGCTTCAGAGACTAGAATTGGCTAACAATAGTCTCACCGGTGGAATTCCGAACGACATTGCTTCTTCGACATCTCTTTCTTTCATTGATTTCTCCAGAAACAACCTCAGCTCTTCCATTCCTTCGACTGTTATTTCCATTCCAAATCTGCAAACGTTCATGGTCTCCGAAAACAACCTGGAAGGTGAGATTCCAGATCAATTCCAGGACTGTCCTTCACTCGGAGTCCTTGATCTCTCATCAAACTTTTTTTCTGGGACCATTCCAGAAAGCATTGCTTCATGTCAGAAATTGGTGAAATTGAGCCTACAGAATAACCGATTGACCGGTGGCATCCCAGAAGCAGTAGCAAGCATGCCTACATTGTCTATTCTTGATCTTGCTAACAACTCTCTAACTGGTCAAATACCTGGTAGCTTTGGCATATCTCCAGCTCTGGAAACATTCAATGTCTCATACAACAAGCTACAAGGTCCTGTCCCGGAAAACGGCATGCTAAAAGCAATTAATCCAAATGATCTTGTGGGAAATGCTGGCCTATGTGGTGGTTTCTTCCCTCCATGTGGAAAAACCTCGGCATACTCATTAAGGCACGGAAGCTCGCACGCAAAGCGCGTTATTGTAGGATGGATAGTTGGAATATCTTCAATCTTAGCCATTGGAGTTGCTGCTTTGGTAGCAAGATCTATATACACGAAGTGGTACACCGAAGGATTGTGCTTCCATGGAAGATTTTATAGAGGTGGCAAAGGGTGGCCATGGAGATTGATGGCATTTCAGAGACTTGATTTTACGAGTACCGATATCCTATCCTGCATCAAAGAATCAAACGTGATAGGCATGGGAGGAACCGGCGTTGTTTATAAGGCCGAGATACCACAATCAAGTACAGCTGTGGCTGTCAAAAAACTGTGGAGATCAGAATCAGATATCGAGGTAGGAAGTAGTAGCGACGATCTTGTTGGAGAGGTGAATCTTCTAGGGAGGCTAAGGCATAGAAATATTGTTAGACTACTAGGTTTTCTTTATAATGACACAGATTTGATGATAGTTTATGAATTTATGGTGAATGGAAACCTTGGAGATGCCTTGCATGGTAAACAAGCTGCAAGATTGCTTGTTGACTGGGTTTCCCGGTATAACATAGCACTGGGAATCGCACAAGGACTCGCTTATCTTCATCATGACTGTCATCCACCTGTTATTCATCGAGACATCAAGTCGAATAACATACTGCTCGACGCAAATCTTGAGGCGAGGATAGCAGATTTCGGATTAGCCAAGATGATGATTCGGAAGAATGAAACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCTCCTGAATATGGATACTCCTTGAAGGTAGATGAAAAGATTGACATTTACAGCTTTGGAATAGTTCTGTTGGAGCTGATAACAGGAAAGCGGCCGATAGATCCGGATTTCGGAGAATCTATCGACATTGTAGGGTGGATTAGAACAAAGATAGACAAAAATTCACCAGAAGAAGCATTAGACCCAAGTGTAGGAAACTGTAAACATGTTCAAGAAGAGATGCTTTTAGTTCTCAGAATAGCACTTCTCTGCACTGCTAAGCTACCTAAGGACAGACCCTCCATGAGAGATGTTATAATGATGCTAGGAGAGGCAAAACCAAGGAGAAAAAGTGGTAAGAACAATGATACATTAACTGCTAACAGAGAGATGCCAGTAATTAGAACTTCACCAGTTAATGACCTTCTGTAG 3048 0.4219 MQLKNQFFFLLFICCIFCFHSSFSAAENNEASALLSVKAGLIDPLNSFHDWKVTGAAQAHCNWTGVECNSAGAVEKLNLSHMNLSGSVSNEIQSLKSLTFLNLCCNGFESLLSKHITNLTSLKSLDVSQNFFTGDFPLGLGKALGLVTLNASSNNFSGFLPEDLGNVSSLEILDLRGSFFEGSIPKSLCNLSKLKFLGLSGNNLTGKIPVEIGKLSSLESMIIGYNEFEGGIPKEFGNLTKLKYLDLAEGNFSGEIPAELGKLKLLNTVFLYKNSFEGKIPPTIGNMTSLMLLDLSDNMLSGNIPDEISRLKNLQLLNVMRNKLSGPVPAGLGDLPQLEVLELWNNSFSGPLPSDLGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFKGPIPTSLSKCPSLVRVRIQNNFLSGTIPVGFGKLGKLQRLELANNSLTGGIPNDIASSTSLSFIDFSRNNLSSSIPSTVISIPNLQTFMVSENNLEGEIPDQFQDCPSLGVLDLSSNFFSGTIPESIASCQKLVKLSLQNNRLTGGIPEAVASMPTLSILDLANNSLTGQIPGSFGISPALETFNVSYNKLQGPVPENGMLKAINPNDLVGNAGLCGGFFPPCGKTSAYSLRHGSSHAKRVIVGWIVGISSILAIGVAALVARSIYTKWYTEGLCFHGRFYRGGKGWPWRLMAFQRLDFTSTDILSCIKESNVIGMGGTGVVYKAEIPQSSTAVAVKKLWRSESDIEVGSSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDLMIVYEFMVNGNLGDALHGKQAARLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSFGIVLLELITGKRPIDPDFGESIDIVGWIRTKIDKNSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKSGKNNDTLTANREMPVIRTSPVNDLL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06676 1015 Gene3D Transferase(Phosphotransferase) domain 1 787 1005 - -
Vivi1g06676 1015 FunFam Leucine-rich repeat receptor protein kinase EMS1 280 363 - -
Vivi1g06676 1015 SMART LRR_typ_2 551 574 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 119 143 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 287 311 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 95 118 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 431 455 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 479 502 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 335 359 IPR003591 -
Vivi1g06676 1015 SMART LRR_typ_2 191 215 IPR003591 -
Vivi1g06676 1015 Gene3D Phosphorylase Kinase; domain 1 696 786 - -
Vivi1g06676 1015 FunFam MDIS1-interacting receptor like kinase 1 791 1000 - -
Vivi1g06676 1015 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Vivi1g06676 1015 Gene3D Ribonuclease Inhibitor 274 381 IPR032675 -
Vivi1g06676 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 364 624 - -
Vivi1g06676 1015 ProSiteProfiles Protein kinase domain profile. 705 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06676 1015 SUPERFAMILY RNI-like 271 590 - -
Vivi1g06676 1015 Pfam Leucine rich repeat 408 468 IPR001611 GO:0005515
Vivi1g06676 1015 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Vivi1g06676 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vivi1g06676 1015 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Vivi1g06676 1015 Gene3D Ribonuclease Inhibitor 177 273 IPR032675 -
Vivi1g06676 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 624 996 - -
Vivi1g06676 1015 MobiDBLite consensus disorder prediction 984 1015 - -
Vivi1g06676 1015 SUPERFAMILY L domain-like 58 324 - -
Vivi1g06676 1015 SMART serkin_6 705 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06676 1015 Pfam Protein kinase domain 707 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06676 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 27 178 - -
Vivi1g06676 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 179 279 - -
Vivi1g06676 1015 FunFam MDIS1-interacting receptor like kinase 1 705 790 - -
Vivi1g06676 1015 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Vivi1g06676 1015 ProSitePatterns Protein kinases ATP-binding region signature. 711 735 IPR017441 GO:0005524
Vivi1g06676 1015 Gene3D Ribonuclease Inhibitor 382 621 IPR032675 -
Vivi1g06676 1015 SUPERFAMILY Protein kinase-like (PK-like) 699 981 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06676 Vivi-Chr1 154655649 154659845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06676 1 1015 Receptor kinase-like Gene Family AT1G08590 60.232 0.0 1182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g06676 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06676 - - gmx:100788430 1681