Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06675 ATGTCTACGGTTTCTAAAGATGATAACTTGGCTCTTTCTTCTGAGGATTCTTCTAGTCCGGATGAGTCTGAGCTTGAATTGGGTCTTGGCTTGAGTCTTTCTCATCCTGGTGCAAAGTCACACCAGTATCATCAGCAGCAGAATGGTAACTATGCTAGGATTTTTACTGCTAAGGATTTTTCTTCTTCTTCACCTTCCTCTGCTGGAACTAAGAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCCCTTCGAACATACCGAGTGAATAGCTTTAACGCCAACGTGAAATCAACTGAAGCATTCAACTCTGTGGCTGAGAAGAGCAAAAACAACAATACTGTGGCAAGGAAGAGTACTGACAACGGAAAGGAGGATAGTAACGTTAATGTCAAAGATAAAAGAAACCTCAAGAGTTCCCCGTTTGTCAAAGTAAACATGGATGGAATACCAATTGGAAGAAAGGTTGATTTGAGCGCTCACAGCTCCTACGAAACATTGGTAGAGACATTGGAGGACATGTTTGATGAATCATCCACAGGCGTCACTTGCAAAGGATCAAATGGTGAGGATCAGAACATGACTATCAGAGGAGAAAAGCTTTCGATACTGTTGGATGGTTCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGAGAATGTTCGTTAGTTCCGTGAAGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAGCAGCAGACCGAAAAGCAAGCCGAAATAG 828 0.4336 MSTVSKDDNLALSSEDSSSPDESELELGLGLSLSHPGAKSHQYHQQQNGNYARIFTAKDFSSSSPSSAGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANVKSTEAFNSVAEKSKNNNTVARKSTDNGKEDSNVNVKDKRNLKSSPFVKVNMDGIPIGRKVDLSAHSSYETLVETLEDMFDESSTGVTCKGSNGEDQNMTIRGEKLSILLDGSSKFVLTYEDKEGDWMLVGDVPWRMFVSSVKRLRIMRTSEANGLAPRLEEKSSRPKSKPK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06675 275 ProSiteProfiles PB1 domain profile. 148 255 IPR000270 GO:0005515
Vivi1g06675 275 MobiDBLite consensus disorder prediction 115 137 - -
Vivi1g06675 275 MobiDBLite consensus disorder prediction 38 83 - -
Vivi1g06675 275 Pfam AUX/IAA family 49 262 IPR033389 -
Vivi1g06675 275 Gene3D - 143 265 - -
Vivi1g06675 275 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g06675 275 FunFam Auxin-responsive protein 143 263 - -
Vivi1g06675 275 SUPERFAMILY CAD & PB1 domains 144 251 - -
Vivi1g06675 275 MobiDBLite consensus disorder prediction 1 89 - -
Vivi1g06675 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 258 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06675 Vivi-Chr1 154653578 154656012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06675 143 262 B3 DNA Binding Superfamily AT1G59750 33.333 7.94e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi1g06675 AUX_IAA 9.3e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06675 K14484 - gmx:100779400 343.199