Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06674 ATGTCTACGGTTTCTAAAGATGATAACTTGGCTCTTTCTTCTGAGGATTCTTCTAGTCCGGATGAGTCTGAGCTTGAATTGGGTCTTGGCTTGAGTCTTTCTCATCCTGGTGCAAAGTCACACCAGTATCATCAGCAGCAGAATGGTAACTATGCTAGGATTTTTACTGCTAAGGATTTTTCTTCTTCTTCACCTTCCTCTGCTGGAACTAAGAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGCAGTCAAGTAGTTGGATGGCCTCCCCTTCGAACATACCGAGTGAATAGCTTTAACGCCAACGTGAAATCAACTGAAGCATTCAACTCTGTGGCTGAGAAGAGCAAAAACAACAATACTGTGGCAAGGAAGAGTACTGACAACGGAAAGGAGGATAGTAACGTTAATGTCAAAGATAAAAGAAACCTCAAGAGTTCCCCGTTTGTCAAAGTAAACATGGATGGAATACCAATTGGAAGAAAGGTTGATTTGAGCGCTCACAGCTCCTACGAAACATTGGTAGAGACATTGGAGGACATGTTTGATGAATCATCCACAGGCGTCACTTGCAAAGGATCAAATGGTGAGGATCAGAACATGACTATCAGAGGAGAAAAGCTTTCGATACTGTTGGATGGTTCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGAGAATGTTCGTTAGTTCCGTGAAGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAGCAGCAGACCGAAAAGCAAGCCGAAATAG 831 0.4344 MSTVSKDDNLALSSEDSSSPDESELELGLGLSLSHPGAKSHQYHQQQNGNYARIFTAKDFSSSSPSSAGTKRPADSLDATNRPSSQVVGWPPLRTYRVNSFNANVKSTEAFNSVAEKSKNNNTVARKSTDNGKEDSNVNVKDKRNLKSSPFVKVNMDGIPIGRKVDLSAHSSYETLVETLEDMFDESSTGVTCKGSNGEDQNMTIRGEKLSILLDGSSKFVLTYEDKEGDWMLVGDVPWRMFVSSVKRLRIMRTSEANGLAPRLEEKSSRPKSKPK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06674 276 MobiDBLite consensus disorder prediction 1 90 - -
Vivi1g06674 276 MobiDBLite consensus disorder prediction 38 88 - -
Vivi1g06674 276 Pfam AUX/IAA family 48 263 IPR033389 -
Vivi1g06674 276 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g06674 276 ProSiteProfiles PB1 domain profile. 149 256 IPR000270 GO:0005515
Vivi1g06674 276 MobiDBLite consensus disorder prediction 117 137 - -
Vivi1g06674 276 FunFam Auxin-responsive protein 144 264 - -
Vivi1g06674 276 SUPERFAMILY CAD & PB1 domains 145 252 - -
Vivi1g06674 276 Gene3D - 144 266 - -
Vivi1g06674 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 259 IPR003311 GO:0005634|GO:0006355
Vivi1g06674 276 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06674 Vivi-Chr1 154653575 154656012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06674 144 263 B3 DNA Binding Superfamily AT1G59750 33.333 7.78e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi1g06674 AUX_IAA 2.5e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06674 K14484 - gmx:100779400 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03919 6 135457900 135459193 Vivi1g06674 1 154653575 154656012 PCT