Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06668 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTGACCGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTTCAGCCTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGGAAGAAGCATTACTCTGATGCTGTTGATTGCTACACAAGGGCAATCAATCAGAATGCCTTGACTGATTCTGACACCTCTATTCTTTTTTCAAATAGAGCCCTTGTTAATTTGCTTCTTGGGAATTTCAGACGAGCACTTAATGATGCTAATGATGCACTCAAGTTGCAACCTTCAAACATAAAGGCGATTTATAGAGCTGCCAAAGCTTCTTTTTCATTGAATTTGTTGGATGAGGCACAAGACTATTGTCAAATGGGTCTTGATTTGGACCCTAATAATGATGAATTGAAGAAGCTTGACAATCAGATTGGTATTAAGATATTGGAGAATGAAAAACATGAAGCTGAAGTTTCTAAGGCTGTTGCAGATGCAAAGGAACTTGTTTCTGCAATGGAAAGTAGAGGCTTGAAGATTGGAAAGGCCATGTATCGAGAGCTCACTGGGTTAAAGAAACCTGTGTTAGACAAAAATAACATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTTGGATCACCTTGATATGGTATTTGCAGAAGATCAGCCGCTCTCATGGGATGTTGAAAACAATTACAAGCGTGAATTTATTGAGTTATATTATGACGCTGGTTCTGGACCTCGTCTATCTAAGGAAAAACTCCTTCGTTATCTATTAGAGGGAACTGCTGCAGCTTCTAATGTGGAAGGTAGTGGTGATGAAGAAAAAGATGCGGTTGAGGATCTTAAGCAAAACACGGGCTCCCCTAAATGGATCAAAGTAAATGAAAGGAGAACACTTCACGATGTTCTGAAAGAGTCTAAGTTCATCATTCCTGAGATCCCAGTCTTCTATGTCGTTTCTAAGAAATCTAGCTTTTATAGCAAATTCAAAGATGGAAGTTGGGCTCCTCCAAGTGTATGA 1086 0.4042 MALWMEKGSEPLTETEKADLEAIAAIKESSAFELKEKGNQYVKMGKKHYSDAVDCYTRAINQNALTDSDTSILFSNRALVNLLLGNFRRALNDANDALKLQPSNIKAIYRAAKASFSLNLLDEAQDYCQMGLDLDPNNDELKKLDNQIGIKILENEKHEAEVSKAVADAKELVSAMESRGLKIGKAMYRELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFLDHLDMVFAEDQPLSWDVENNYKREFIELYYDAGSGPRLSKEKLLRYLLEGTAAASNVEGSGDEEKDAVEDLKQNTGSPKWIKVNERRTLHDVLKESKFIIPEIPVFYVVSKKSSFYSKFKDGSWAPPSV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06668 361 Pfam Cns1/TTC4 Wheel domain 200 266 IPR044059 GO:0051879
Vivi1g06668 361 Gene3D Tetratricopeptide repeat domain 26 149 IPR011990 GO:0005515
Vivi1g06668 361 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Vivi1g06668 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 356 - -
Vivi1g06668 361 Coils Coil 150 170 - -
Vivi1g06668 361 CDD CTWD_Cns1-like 170 353 - -
Vivi1g06668 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Vivi1g06668 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Vivi1g06668 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Vivi1g06668 361 SUPERFAMILY TPR-like 21 142 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06668 Vivi-Chr1 154594726 154598057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06668 30 160 Calmodulin-binding Proteins AT3G25230 32.653 3.53e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06668 K24927 - gmx:100783179 572.778