Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06667 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTGACCGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTTCAGCCTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGGAAGAAGCATTACTCTGATGCTGTTGATTGCTACACAAGGGCAATCAATCAGAATGCCTTGACTGATTCTGACACCTCTATTCTTTTTTCAAATAGAGCCCTTGTTAATTTGCTTCTTGGGAATTTCAGACGAGCACTTAATGATGCTAATGATGCACTCAAGTTGCAACCTTCAAACATAAAGGCGATTTATAGAGCTGCCAAAGCTTCTTTTTCATTGAATTTGTTGGATGAGGCACAAGACTATTGTCAAATGGGTCTTGATTTGGACCCTAATAATGATGAATTGAAGAAGCTTGACAATCAGATTGGTATTAAGATATTGGAGAATGAAAAACATGAAGCTGAAGTTTCTAAGGCTGTTGCAGATGCAAAGGAACTTGTTTCTGCAATGGAAAGTAGAGGCTTGAAGATTGGAAAGGCCATGTATCGAGAGCTCACTGGGTTAAAGAAACCTGTGTTAGACAAAAATAACATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTTGGATCACCTTGATATGGTATTTGCAGAAGATCAGCCGCTCTCATGGGATGTTGAAAACAATTACAAGCGTGAATTTATTGAGTTATATTATGACAAAACTTATACTTCAGAAGCAATTTTCCCCCTCTCCCCTTATTCATTCTTTTATCAGGCTGGTTCTGGACCTCGTCTATCTAAGGAAAAACTCCTTCGTTATCTATTAGAGGGAACTGCTGCAGCTTCTAATGTGGAAGGTAGTGGTGATGAAGAAAAAGATGCGGTTGAGGATCTTAAGCAAAACACGGGCTCCCCTAAATGGATCAAAGTAAATGAAAGGAGAACACTTCACGATGTTCTGAAAGAGTCTAAGTTCATCATTCCTGAGATCCCAGTCTTCTATGTCGTTTCTAAGAAATCTAGCTTTTATAGCAAATTCAAAGATGGAAGTTGGGCTCCTCCAAGTGTATGA 1143 0.4016 MALWMEKGSEPLTETEKADLEAIAAIKESSAFELKEKGNQYVKMGKKHYSDAVDCYTRAINQNALTDSDTSILFSNRALVNLLLGNFRRALNDANDALKLQPSNIKAIYRAAKASFSLNLLDEAQDYCQMGLDLDPNNDELKKLDNQIGIKILENEKHEAEVSKAVADAKELVSAMESRGLKIGKAMYRELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFLDHLDMVFAEDQPLSWDVENNYKREFIELYYDKTYTSEAIFPLSPYSFFYQAGSGPRLSKEKLLRYLLEGTAAASNVEGSGDEEKDAVEDLKQNTGSPKWIKVNERRTLHDVLKESKFIIPEIPVFYVVSKKSSFYSKFKDGSWAPPSV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06667 380 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 375 - -
Vivi1g06667 380 Gene3D Tetratricopeptide repeat domain 26 149 IPR011990 GO:0005515
Vivi1g06667 380 CDD CTWD_Cns1-like 170 372 - -
Vivi1g06667 380 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Vivi1g06667 380 Pfam Cns1/TTC4 Wheel domain 200 264 IPR044059 GO:0051879
Vivi1g06667 380 SUPERFAMILY TPR-like 21 142 IPR011990 GO:0005515
Vivi1g06667 380 Coils Coil 150 170 - -
Vivi1g06667 380 SMART tpr_5 71 104 IPR019734 GO:0005515
Vivi1g06667 380 SMART tpr_5 105 138 IPR019734 GO:0005515
Vivi1g06667 380 SMART tpr_5 31 66 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06667 Vivi-Chr1 154594724 154598057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06667 30 160 Calmodulin-binding Proteins AT3G25230 32.653 5.23e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06667 K24927 - gmx:100783179 561.222