Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06657 ATGGCCACCGAAGAACCAATTATCGCCGTTGAACCTGTGGCTGAGCCAGCGATCGCCGAACCTCCAGCCTCTGAGAAAGTGGAGGAACCAAAGGCTGAAGCTGGGAAGACGAAGAAAACCAAGGAATCCAAACCTAAAAAAGCTTCCAAGCCACGAAACCCTGCTTCACATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTTTCGTTGAAGGAGAAGAATGGTTCGAGCCAATACGCAATTGCGAAATTCATTGAAGAGAAACACAAACAGCTTCCTGCTAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAACGTTGCTTCTGGAAAGCTTGCTAAGGTGAAAGGTTCATTCAAGCTTTCTGCAGCGGCTAAGAAGCCAGCAGTTGCCAAGCCGAAAGCAAAGCCAGCTGCCAAGAAGGCTGTGAAGGCTAAGACAGCCGCTAAGCCTAAAGCTAAAGCTGTTGTCAAGCCTAAGACTGCTTCAAAGGCCAAATCTGTTACCACCAAACCCAAAGCGGCTGCCGCCAAGCCCAAAGCTGCTGCCAAGCCCAAGGCTGCTGTGAAACCTAAAGCTGCTATCAAGCCCGAGGCTGCTGTAAAGCCTAAAACTGTTGCTAGGCCCAAGGCAAAGTCTGCAAAGGTTGCGAAGACATCGACGAGGACTACACCAGGGAAGAAAGTTGCTGTTGTGAAGACCGCACCTAAGAAAGCAGCGGCTGCAAAGAAAGCTCCGGTGAAGAGTGTGAAAGCAAAGAGTGTAAAGTCCCCTGCAAAGAAGGCTTCCGGGGTGAAGAGAGGTGGAAGGAAATGA 822 0.4903 MATEEPIIAVEPVAEPAIAEPPASEKVEEPKAEAGKTKKTKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKNVASGKLAKVKGSFKLSAAAKKPAVAKPKAKPAAKKAVKAKTAAKPKAKAVVKPKTASKAKSVTTKPKAAAAKPKAAAKPKAAVKPKAAIKPEAAVKPKTVARPKAKSAKVAKTSTRTTPGKKVAVVKTAPKKAAAAKKAPVKSVKAKSVKSPAKKASGVKRGGRK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06657 273 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06657 273 PRINTS Histone H5 signature 173 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06657 273 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06657 273 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06657 273 PRINTS Histone H5 signature 195 214 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06657 273 MobiDBLite consensus disorder prediction 22 40 - -
Vivi1g06657 273 SUPERFAMILY "Winged helix" DNA-binding domain 53 133 IPR036390 -
Vivi1g06657 273 CDD H15 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06657 273 PANTHER HISTONE H1 32 255 - -
Vivi1g06657 273 MobiDBLite consensus disorder prediction 1 61 - -
Vivi1g06657 273 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06657 273 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06657 273 MobiDBLite consensus disorder prediction 125 273 - -
Vivi1g06657 273 MobiDBLite consensus disorder prediction 135 161 - -
Vivi1g06657 273 Gene3D - 51 136 IPR036388 -
Vivi1g06657 273 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06657 Vivi-Chr1 154384892 154386001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06657 58 154 Single Myb Histone (SMH) Gene Family AT1G72740 30.612 7.35e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06657 K11275 - psat:127122354 166.007