Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06654 ATGGCCACCGAAGAACCAATTATCGCCGTTGAACCTGTGCCTGAGCCAGCGATCGCCGAACCTCCAGCCTCTGAGAAAGTGGAGGAACCAAAAGTTGAAGCTGGGAAGACGAAGAAAACGAAGGAATCCAAACCTAAGAAAGCTTCCAAGCCACGAAACCCTGCTTTGCATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTGTCGTTGAAGGAGAAGAACGGTTCGAGCCAATACGCAATTGCGAAATTCATTGAAGAGAAGCACAAACAGCTTCCTGCTAACTTCAAGAAGCTATTGCTCCAAAATCTGAAGAAAAAAGTTGCTTCTGGAAAGCTCGTTAAAGTTAAAGGCTCATTCAAGCTCTCTGCAACGGCTAAGAAGCCAGTAGTTGCCAAACCGAAGACAAAGCCAGTAGCTGCAAAGGTGAAGTCTGTGAAGGCTAAGACAGCCGCTAAGCCAAAAGCTAAAGCTGTTGTTAAGCCAAAGGCTGCTTCAAAGGCCAAATCTGTTACTACCAAGCCCAAAGCTGCTGCTGCCAAGCCCAAAACTACCGTCAAGCCTAAAGCTGCTGCCGAACCCAAAGCTGCCATCAAGCCCAAAGCTGCTGCTAAGGCTAAAACTGTTGCTAAGCCCAAAGCAGCTGCGAAACCAAAGCCCGCAAAGGTTGCAAAGACATCGACGAAGACTACACCAGGAAAGAAAGTTGCTGTTGCGAAGCCTGCGCCTAAGAAAGCTCCTGTGAAGAGTGTTAAGTCTCCAGCCAAGAAGGCTTCCGGTGTGAAGAGAGGGGGAAGGAAATGA 807 0.4808 MATEEPIIAVEPVPEPAIAEPPASEKVEEPKVEAGKTKKTKESKPKKASKPRNPALHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSATAKKPVVAKPKTKPVAAKVKSVKAKTAAKPKAKAVVKPKAASKAKSVTTKPKAAAAKPKTTVKPKAAAEPKAAIKPKAAAKAKTVAKPKAAAKPKPAKVAKTSTKTTPGKKVAVAKPAPKKAPVKSVKSPAKKASGVKRGGRK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06654 268 MobiDBLite consensus disorder prediction 22 40 - -
Vivi1g06654 268 CDD H15 54 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06654 268 PANTHER HISTONE H1 35 253 - -
Vivi1g06654 268 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06654 268 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g06654 268 SUPERFAMILY "Winged helix" DNA-binding domain 54 130 IPR036390 -
Vivi1g06654 268 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06654 268 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06654 268 PRINTS Histone H5 signature 175 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06654 268 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06654 268 PRINTS Histone H5 signature 197 216 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06654 268 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi1g06654 268 MobiDBLite consensus disorder prediction 149 163 - -
Vivi1g06654 268 Gene3D - 51 138 IPR036388 -
Vivi1g06654 268 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g06654 268 MobiDBLite consensus disorder prediction 148 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06654 Vivi-Chr1 154280479 154281581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06654 58 156 Single Myb Histone (SMH) Gene Family AT1G72740 30.392 7.03e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06654 K11275 - psat:127122354 158.303