Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06652 ATGGCAGAGGTGATAGGTACTTTCATATTGATGTTTTGTGTATGTGGAATTATTGCAAGCACACAACACCAAGACAATGCAGTGGGTCTTCTAGAGTATGCAGCTACAGCAGGATTAACAGTGGTTGTGATAATTTTTTCTATTGGCCAAATTTCTTGTGCACATGTTAACCCAGCTATCACAATTGCCTTTGCAACAATTGGTCAATTTCCATGGTTCAAGGTTCCGATTTACATAATAGCACAAACAATAGGTTCTTTGATGGCAACATATATTGGTAGCCTTGTCTATGGAATAAAATCAGATGTTATGATGACTCAACCACTCCAAGGTTGCAACTCTGCCTTCTGGGTGGAGCTTATTGCATCATTCATCATCATGTTTTTGGTTACAGCTTTGACATCTGAACCTCAATCTGTGGGACATTTATCTGGTTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGGACCGGTTTCGGGTGGATCAATGAATCCAGCAAGATCACTAGGTCCAGCAATTATGTCATGGAAATTTAAGGACATTTGGATATACATTCTAGCCCCAAATTTAGGAGCTGTTGCAGGAGCACTAATGTTTCGTTTCCTACGTCTACAAGACCAACATTGCAATTCCGCAAACATGAGGGAAGTTGGTCATCCCATACCCTTTTGTGCAAGTTAG 693 0.4055 MAEVIGTFILMFCVCGIIASTQHQDNAVGLLEYAATAGLTVVVIIFSIGQISCAHVNPAITIAFATIGQFPWFKVPIYIIAQTIGSLMATYIGSLVYGIKSDVMMTQPLQGCNSAFWVELIASFIIMFLVTALTSEPQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIMSWKFKDIWIYILAPNLGAVAGALMFRFLRLQDQHCNSANMREVGHPIPFCAS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06652 230 PRINTS Major intrinsic protein family signature 186 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 PRINTS Major intrinsic protein family signature 37 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 PRINTS Major intrinsic protein family signature 149 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 PRINTS Major intrinsic protein family signature 118 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 Pfam Major intrinsic protein 1 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g06652 230 SUPERFAMILY Aquaporin-like 1 211 IPR023271 -
Vivi1g06652 230 Gene3D Glycerol uptake facilitator protein. 1 220 IPR023271 -
Vivi1g06652 230 ProSitePatterns MIP family signature. 55 63 IPR022357 -
Vivi1g06652 230 PANTHER AQUAPORIN NIP2-1 1 214 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06652 Vivi-Chr1 154258667 154259965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06652 1 230 Major Intrinsic Protein MIP AT5G37820 38.095 2.67e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06652 K09874 - gmx:100817660 387.111