Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06632 ATGGAGTTCAGCTACCTCCAAGAAGACTCAAAGAGCTCGAGCGACGAAAACATCGACCGATCGTCCGATCAAAACCCCGACAACGACGATAACGATGATCATGACATGGGAATTGGTAGATCCTATGAGTGTGTGTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAACAATAACAAAAGTGTGACTAAAGCAACTTTCATTCCACCTAGTTCAAGCAAATTAGTACTTGATCATCATCATCATCATGATAGCTATGGAGATCTTGGATTTTATTCAACAATTAATCCATCTCATGGTTATTATTCTTCTTCAATTTCATCCAAAACTACTACTACTCCTGAGGTAGATTCTCTCAACTATCATCAACTATATTTTCCTTCACATCATGTGCAATATAGTGAGATGCTTTGTGTTGAAAATCAAAGAATGTTTGGATCACAAGATTGGAGGGGTTTGAGCTTGTATGCAAATCCATTGATTAAAGACAAGATAGAAAACAACAATGAAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 594 0.3737 MEFSYLQEDSKSSSDENIDRSSDQNPDNDDNDDHDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKATFIPPSSSKLVLDHHHHHDSYGDLGFYSTINPSHGYYSSSISSKTTTTPEVDSLNYHQLYFPSHHVQYSEMLCVENQRMFGSQDWRGLSLYANPLIKDKIENNNEVDELDLELRLGHYP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06632 197 Gene3D Classic Zinc Finger 31 96 - -
Vivi1g06632 197 Pfam C2H2-type zinc finger 42 66 - -
Vivi1g06632 197 MobiDBLite consensus disorder prediction 12 35 - -
Vivi1g06632 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vivi1g06632 197 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Vivi1g06632 197 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vivi1g06632 197 PANTHER OS07G0101800 PROTEIN 20 195 - -
Vivi1g06632 197 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06632 Vivi-Chr1 153333922 153335010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06632 42 132 C2H2 Transcription Factor Family AT5G43540 42.857 4.78e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g06632 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06632 - - gmx:102670484 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06632 1 153333922 153335010 Vivi1g06632 1 153333922 153335010 ECH