Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06629 ATGGCTTCTTCAAATGGATTTGGCTCTAGCACTACCTCTTCAGGATCTCCATGTGGAGCATGCAAGTTTCTCCGTAGAAAATGTACATCTGAATGCATATTTGCACCTTATTTTTGCTGTGAACAAGGACCTGCTAGATTTGCAGCTATTCATAAAGTGTTTGGTGCCAGCAACGTTTCCAAGATGCTGTTGCATATACCTCCTCAAGATCGTTGCGATGCTGTTGTCACAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGCTGTGTCTCCCATATTTTGGCTTTGCAGCAACAGGTAGCAAGCTTGCAAGCACAACTGATGCAAGTGAAGGCACAGCTGAACTCTATATCTCCTAAGAGTTCGTTTGATTTGATTGATTATAACAGCTGCAGTATCAGTGATGGAATGAGCACGCCAGACATTCGAAGCAATAGAGAGGGTTTCACTTTCTTATTCCAAGGTTGTTCTAAGAAAAATAATGATTTGACTGAGCTTCAAGAGCTGGCTCTCAGAATGGCAGGCAACTAA 543 0.4199 MASSNGFGSSTTSSGSPCGACKFLRRKCTSECIFAPYFCCEQGPARFAAIHKVFGASNVSKMLLHIPPQDRCDAVVTIAYEAQARIIDPVYGCVSHILALQQQVASLQAQLMQVKAQLNSISPKSSFDLIDYNSCSISDGMSTPDIRSNREGFTFLFQGCSKKNNDLTELQELALRMAGN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06629 180 Coils Coil 97 117 - -
Vivi1g06629 180 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 124 - -
Vivi1g06629 180 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Vivi1g06629 180 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06629 Vivi-Chr1 153227413 153228292 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06629 1 129 AS2 family AT2G42430 72.308 5.23e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g06629 LOB 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06629 K13944 - vvi:100261792 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03883 6 134767933 134769663 Vivi1g06629 1 153227413 153228292 PCT