Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06627 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATTAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCAACTTCCTATAAGCGATCGATGTGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGATGTGTCTCTCATATCTTTGCCCTCCAACAACAGGTGGTTAATTTACAAACACAACTTGCTTATCTCAAAGAGCAAGCAGCACAGACTAGTTTCAACAATTCATCTACCAATGAAAACCCTAATGAAAAGTCAACACCTCATACTCTTCCTCAAGATCTTCAAAGTTTGTTCCAAGTTGAAAACTCCAATAATTACTACCAGCATGGACAAGAATTCCTTACTAATAACATGTCTAATATTTCACTAACAACACAACATTATGGTAACAATAACCACATGGATCTAAACCCTATGAGGAACTATGAAGAAAACAGTTCATCATTTTCTAGCTTTGAGGAGAGTACTTCTAATTCCATATCTTATGACATGCAAACAAATAGGAGGACATGGGGTTTTGATGAAGTTGAAGACCTGCATTCAGTGGCTTTTCGATATAGTTGA 699 0.3763 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAQLPISDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQAAQTSFNNSSTNENPNEKSTPHTLPQDLQSLFQVENSNNYYQHGQEFLTNNMSNISLTTQHYGNNNHMDLNPMRNYEENSSSFSSFEESTSNSISYDMQTNRRTWGFDEVEDLHSVAFRYS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06627 232 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Vivi1g06627 232 MobiDBLite consensus disorder prediction 116 135 - -
Vivi1g06627 232 Coils Coil 91 111 - -
Vivi1g06627 232 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 202 - -
Vivi1g06627 232 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06627 Vivi-Chr1 152991318 152992395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06627 11 231 AS2 family AT3G58190 54.505 8.70e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g06627 LOB 6.6e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06627 1 152991318 152992395 Vivi1g06627 1 152991318 152992395 ECH
Vivi6g03882 6 134753806 134755183 Vivi1g06627 1 152991318 152992395 PCT