Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06618 ATGAGTAATTCTTCAGAATCCCCTTCTCCATCCTCATACAAAACCAGATCCAAACTTCGAAGCTCCAAAGCTCTATTCAAAGATCCCATTGATGAACTAAGTACGAAGACTCCAGAGAAGTTGCCACAGCGTACTCGCAACCGTGGAGTTGCGCTTTCTTTATCGGATATTAGGAAAGTCACTAAGGGTCTTCATGATCAGAAACAACCGAACGAAACGGTGCCGTCTAAGGGGAGAACCGCTAGGAGGCTGATCTCATCGGATTCCCCGCGTAAGGGCAGTAAATTATTCAAGCTTCCTGAGAAATATGAGAATTTGGGGGAGTTTTTTGATAGCTTGGATAGTTCCATTCGATTGTTGCGATTGAAAGGATCCATGACTTCGTTCACTAATATCAGGCCAAAAATTGAAACTTTGACTGATAGGAGGTTTACATATGGTCATTTAGCTCAATTGAAGTTTATCTTACCTGAGGCTATTGCAATTAAGAAGTTATTAGTGTTTGATGAAAGAACTAGTTGTATGAAGCCCGATCTTCATGTAACTATAAACCCTGATGCAGTTGAGTTTGATGATAATATGCGATCTGAATCTGGGACAATGTCTCTGAGGAAGTTGTTTCGTGCTAGGCTCAAAGATTTTTGGGAATCTCATCCAAAGGGTGATGAAATTCCAGAGGAAATATTGCCCGAGCCATTCAGTCGCCCAAAGCAGGAGCCTCTTTTACACATGTTCAAACCTCCCTCAACATTCTCTGCAGTGAAATTGTCAACTAGTGACAATGCAGTTAGTACAGACCCTGATGTCTCAGTGCCCAATGAGACATCATTTGAAGTTCTTAACCAGCAGCCAGCACTTGCCTCTCATATGCCTCCATCTTTTAGAAGACGGTTTTCTCAGAGGGTGAAGGAAAATGTACACCCAAAATTTCCATCAGATTCCTTCCAACCTTCAGTTGTACCATCTACAGAATCAAGCTTGAAGATAAATTCCACATCTGAGGACTCTTTATCCCGTCAGAAAACATCCCCATCTGAGCTGGTTTCAGAAACACCCGACAGTGAAGCATGTCCTACAATTCACTGTTCTTCAATATGCTCCACACCATCCAGTGTTATCCCAGCCACACCTAGTAAAACCATTGAGTGTACAGATGGAAAAGGTGGATCTGTCAAAAGCGGTGAAGCTATGTCAACCCCATTGAAGTGTGTGTCAACTCCATCCAGGCTGATGTCAGCCACACCTGCTTTGAAGCCACCTAAAAGGCATATAATGACTCCGGAAGACAACTCTGCAAGCTTACCAGACAAGTTGGTTAAGCGCCCACCTCGATCAAGGTCTTTGAAATTTGACACTCCAGTGAAAAATGAAAATGATGCCAGCAGTTTATCAAGGTCATTGAAATTTAGCACTCCATTGAAAAATGAAAATGATGCTAGCAGTTTATCAAGGTCATTGAAATTTGACACTCCTGTGAAAAATGAAAATGATGCTAGCAGTTTGTCAACTGATGATGACATTTTTGATATCCTACCAGATACTCTTCTCCATTCGATTAGGGAAAAAGAAAGAATGGCGATAGAGGAAAGGGATCCAGCTATTTCACAAGCTAAGAAACGCAAGAAAATTATTGCCAGTCTTCCCAAACTCTTCAACATGATTCACATGATGTTTCATTCGAGAAATCGTTCTGTTATCACTAAAGAGGAGCTGATAAACACATTAATCTCAAGCCACTCTGATATTGTTGATAGAAGAGAAGTTGAAGAACAGTTCCATCTGTTGTTAGAATTAGTTCCAGAATGGATTTCTGAGAAGTTGGCTTCCAGTGGAAATATGCTGCTTGTCTCTGTAAATAAAATGTTGAGCCCTGAATCCATAAGATCATCACTTGAAGAAGCAAAATGA 1908 0.4109 MSNSSESPSPSSYKTRSKLRSSKALFKDPIDELSTKTPEKLPQRTRNRGVALSLSDIRKVTKGLHDQKQPNETVPSKGRTARRLISSDSPRKGSKLFKLPEKYENLGEFFDSLDSSIRLLRLKGSMTSFTNIRPKIETLTDRRFTYGHLAQLKFILPEAIAIKKLLVFDERTSCMKPDLHVTINPDAVEFDDNMRSESGTMSLRKLFRARLKDFWESHPKGDEIPEEILPEPFSRPKQEPLLHMFKPPSTFSAVKLSTSDNAVSTDPDVSVPNETSFEVLNQQPALASHMPPSFRRRFSQRVKENVHPKFPSDSFQPSVVPSTESSLKINSTSEDSLSRQKTSPSELVSETPDSEACPTIHCSSICSTPSSVIPATPSKTIECTDGKGGSVKSGEAMSTPLKCVSTPSRLMSATPALKPPKRHIMTPEDNSASLPDKLVKRPPRSRSLKFDTPVKNENDASSLSRSLKFSTPLKNENDASSLSRSLKFDTPVKNENDASSLSTDDDIFDILPDTLLHSIREKERMAIEERDPAISQAKKRKKIIASLPKLFNMIHMMFHSRNRSVITKEELINTLISSHSDIVDRREVEEQFHLLLELVPEWISEKLASSGNMLLVSVNKMLSPESIRSSLEEAK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06618 635 Pfam DNA replication factor CDT1 like 99 198 IPR014939 -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 410 482 - -
Vivi1g06618 635 PANTHER DNA REPLICATION FACTOR CDT1 12 635 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vivi1g06618 635 MobiDBLite consensus disorder prediction 1 49 - -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 454 482 - -
Vivi1g06618 635 CDD Cdt1_m 86 237 IPR014939 -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 439 453 - -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 311 354 - -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 305 354 - -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 1 19 - -
Vivi1g06618 635 FunFam CDT1-like protein a chloroplastic 504 635 - -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 67 83 - -
Vivi1g06618 635 CDD Cdt1_c 510 632 IPR032054 -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 61 93 - -
Vivi1g06618 635 Pfam DNA replication factor Cdt1 C-terminal domain 515 606 IPR032054 -
Vivi1g06618 635 Gene3D - 504 635 IPR038090 -
Vivi1g06618 635 SMART CDT1_2 99 231 IPR014939 -
Vivi1g06618 635 MobiDBLite consensus disorder prediction 21 43 - -
Vivi1g06618 635 SUPERFAMILY "Winged helix" DNA-binding domain 94 233 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06618 37 237 Core DNA Replication Machinery Family AT2G31270 51.869 2.28e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06618 K10727 - qsa:O6P43_006919 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06618 1 152598729 152602768 Vivi1g06618 1 152598729 152602768 ECH