Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06615 ATGGCACTAACCAAGAACCAATTCAACAACCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAGATAATACACTTCATCATCACCCTCCACAGCCTGTTTCACCCTATGCTTTTCCCATTTTTGCCATTGTTGTTCTCAGCATCATTGCTACCATTCTGTTACTCCTCAGCTACATCACTTTTCTAACCAAATTCTGCTCAAACTGGAACCAAGTTAACCCAACAAGATGGATTTCGGTCCTCCGAGCTCGACGGAACGACGAAGATCACTTCATCGCATTGTCTCCTACACCATGGAACCGGGGATTAGACGAATCTGTCATCAGAGATATCCCATCTTTTCAGTTTATAAAAGGTGAATGTGAAGATCAAACTGTATATGGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACAAGATGTGATAAAAATCCTACCAAATTGTAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACAAACTCTAACTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATACAGCAAGTACTCCATTTGATATTATCATAGCTCCAAGCTCTTCTCCTCAGAATTCTTCTTCTCAGTTACTCTCAAACTTATCAAGTGATGAAGATTTTGTTGTCATTGAATTAGGTGGAGAAGAAAATGAGGTTCATGACTCAAGAAGAAGCATAGGACATAGTAGAAACTATCACTCTACAAGGGAAATGAAACCAAAGTGTCCTTATGTGTCCATCATGGGAGATGAGTGTGTTGATATGATCAGAAAGAAAGATGAGTTGTTTTCGATTCAGCCGATTCGGAGATCTTTCTCGTTGGATTCTGCATATGATAGACAAATGTTCATGGATGTTCAAGCCATTATACAACAAAATGAGGCTAGTGCAAGTGAGGATTGTAGTAGCAGAAGTAAAAGAGCATTCTTTCCATTTTGTTATTATGGAAAAGGGTCCAAAAATGTAATCATTCCATTTGGAGAATGA 999 0.3884 MALTKNQFNNLGYQALPPIITQDNTLHHHPPQPVSPYAFPIFAIVVLSIIATILLLLSYITFLTKFCSNWNQVNPTRWISVLRARRNDEDHFIALSPTPWNRGLDESVIRDIPSFQFIKGECEDQTVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTASTPFDIIIAPSSSPQNSSSQLLSNLSSDEDFVVIELGGEENEVHDSRRSIGHSRNYHSTREMKPKCPYVSIMGDECVDMIRKKDELFSIQPIRRSFSLDSAYDRQMFMDVQAIIQQNEASASEDCSSRSKRAFFPFCYYGKGSKNVIIPFGE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06615 332 PANTHER RING-H2 FINGER PROTEIN ATL16 18 330 IPR044600 GO:0016567|GO:0016740
Vivi1g06615 332 CDD RING-H2_EL5-like 130 172 - -
Vivi1g06615 332 SMART ring_2 130 171 IPR001841 -
Vivi1g06615 332 Pfam Ring finger domain 130 172 IPR001841 -
Vivi1g06615 332 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vivi1g06615 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Vivi1g06615 332 SUPERFAMILY RING/U-box 129 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06615 Vivi-Chr1 152572782 152574213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06615 1 296 C3H Transcription Factor Family AT1G04360 41.056 5.21e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06615 K19041 - gmx:100809883 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06615 1 152572782 152574213 Vivi1g06615 1 152572782 152574213 ECH
Vivi1g06615 1 152572782 152574213 Vivi6g03876 6 134653588 134654837 PCT