Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06599 ATGCATATCATGAATAGTACTTGCTCTTTCTTCCATAACCCAGATTCGAAAGTGTCGCAACAAGATCCTGCTAATGTTGTTCTCTTTAAATCATTTCATCATGTTCATCATGACCCTACTCATGATTTTCTTTCCTACGATATGGTTGACCAAGGACCAACAAAAACTGAGTCAAATCAACTAGTGAAGAACTCTGAAGATAAAGAAAGATCATACATAGGTGTAAGGAAAAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGATACAACTAGAGGAGGAAGAAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGATGCCGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGCAATAATGCTGTCATCAAATTTTCTGTTCAAAGGGTTAGAGTCTTTGCAAGAGATTCAATAAGATTGCAGAGAAGGATCTTCTCCTGCACTTGCACTCAAGGAGAGACACTATAA 477 0.3878 MHIMNSTCSFFHNPDSKVSQQDPANVVLFKSFHHVHHDPTHDFLSYDMVDQGPTKTESNQLVKNSEDKERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVIKFSVQRVRVFARDSIRLQRRIFSCTCTQGETL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06599 158 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Vivi1g06599 158 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
Vivi1g06599 158 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vivi1g06599 158 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Vivi1g06599 158 PANTHER DNA-BINDING DOMAIN 41 129 IPR044808 GO:0003700|GO:0009873
Vivi1g06599 158 CDD AP2 72 128 IPR001471 GO:0003700|GO:0006355
Vivi1g06599 158 FunFam Ethylene-responsive transcription factor 2 70 130 - -
Vivi1g06599 158 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Vivi1g06599 158 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Vivi1g06599 158 Pfam AP2 domain 72 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06599 Vivi-Chr1 152332808 152334060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06599 30 134 AP2-EREBP Transcription Factor Family AT2G31230 53.571 4.16e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06599 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06599 K14516 - gmx:100811486 140.969