Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06598 ATGGAAGGAGAAAATTCAAAGGAAGAGAATGCGAAGCAAGAGTCGACACCAAAAGAAATTCGATACCGAGGAGTTAGACGTCGTCCATGGGGAAAGTATGCGGCCGAGATTCGTGATCCAGCTCGTCGTGGTGCACGTGTGTGGCTAGGCACATTTCTGACGGCGGAGGAAGCAGCGAGAGCTTATGATCGCGCCGCGTTTGAAATGAGAGGCAATTTAGCCATTCTCAATTTTCCACATGAGTATCCTTCTATGAATTCTTCAGCATTTAATTTACCTTCATCTTCTTCCACTCAATTAAGTTATCGCTCTGAGCATGGAAAAGAAGTTATTGAGTTTGAGTGTTTGGATGATAAATTGTTGGAGGATCTTCTTGATTGTGATGAGAAGTGA 393 0.4377 MEGENSKEENAKQESTPKEIRYRGVRRRPWGKYAAEIRDPARRGARVWLGTFLTAEEAARAYDRAAFEMRGNLAILNFPHEYPSMNSSAFNLPSSSSTQLSYRSEHGKEVIEFECLDDKLLEDLLDCDEK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06598 130 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Vivi1g06598 130 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g06598 130 PANTHER DNA-BINDING DOMAIN 7 120 IPR044808 GO:0003700|GO:0009873
Vivi1g06598 130 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vivi1g06598 130 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vivi1g06598 130 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Vivi1g06598 130 SUPERFAMILY DNA-binding domain 21 81 IPR016177 GO:0003677
Vivi1g06598 130 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Vivi1g06598 130 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Vivi1g06598 130 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Vivi1g06598 130 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06598 Vivi-Chr1 152300892 152301284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06598 18 130 AP2-EREBP Transcription Factor Family AT3G23230 59.836 2.80e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g06598 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06598 - - gmx:100810414 143.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06598 1 152300892 152301284 Vivi1g06598 1 152300892 152301284 ECH
Vivi1g06598 1 152300892 152301284 Vivi6g03875 6 134650899 134651381 PCT