Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06597 ATGCATATCATGAGTAGTTACTCTTTCTCCCATGACCCAGATTTAGAAATGCTGCAACAAGATCCTGCTAGTAATAATATTCACTTCGAAACATTTCATCAGGTTCATCATGACCCTACTCATGATTTTCTTTCCTTTGATATGGTTGACCAAGGACCAACAAAAAGTGAGTCAAATCAACTAGTGAAGAATTCTGAAGCTAGAGAAAGATCATACATAGGTGTAAGGAAAAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTCTCAATGAGAGGCAATAATGCTGTCATCAATTTTTCTGTCCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCCAAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGGAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAAGCAGGAAAACAAGATCAATCCGAGGAATCATCATCATCGTCATCAAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAAGTATATCTGATAATCCAAGTACAAGCAACAACAGCTACTTCAAATCAACTTGTTAA 675 0.3763 MHIMSSYSFSHDPDLEMLQQDPASNNIHFETFHQVHHDPTHDFLSFDMVDQGPTKSESNQLVKNSEARERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFSVQRVKESLQEIQYDCQKGSSPALALKERHYNQRKLSSKGVKNNNKAGKQDQSEESSSSSSSVLVLEDLGVEYLEQLLSISDNPSTSNNSYFKSTC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06597 224 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
Vivi1g06597 224 Pfam AP2 domain 72 121 IPR001471 GO:0003700|GO:0006355
Vivi1g06597 224 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Vivi1g06597 224 MobiDBLite consensus disorder prediction 165 189 - -
Vivi1g06597 224 FunFam Ethylene-responsive transcription factor 2 70 130 - -
Vivi1g06597 224 CDD AP2 72 128 IPR001471 GO:0003700|GO:0006355
Vivi1g06597 224 PANTHER DNA-BINDING DOMAIN 40 210 IPR044808 GO:0003700|GO:0009873
Vivi1g06597 224 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vivi1g06597 224 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Vivi1g06597 224 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Vivi1g06597 224 MobiDBLite consensus disorder prediction 162 189 - -
Vivi1g06597 224 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06597 Vivi-Chr1 152284688 152286667 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06597 64 214 AP2-EREBP Transcription Factor Family AT3G23240 54.967 3.25e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06597 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06597 K14516 - gmx:100811486 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06597 1 152284688 152286667 Vivi1g06597 1 152284688 152286667 ECH
Vivi1g06597 1 152284688 152286667 Vivi6g03833 6 133955228 133956278 PCT