Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06594 ATGCCTCAAAGAACCAATCTCTCTTTCTTTCAAAACTCAGATTTCAAAAGGCTGCAGCAAATCCCTTCCGAAATTTCCTTCGAATTCGGTATTAATCATGATTATCTTCCCTTTAGTACGCTTGATTTCTCATCGAGTTCGCAAACATCGATGTCTGCGAACTCGGTGAAGTCATCTGATCAATCTAAAGAAGTATTGCAGAATAATAAGACGGATCAAAAGTCATATATAGGTGTAAGAAAAAGGCCTTGGGGGAAGTTTGCTGCAGAGATTAGAGACACAACAAGAGGAGGCAAAAGGGTTTGGCTTGGAACCTTTGACAGTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTGATAATGCTCCTCTCAATTTTTCTGTCCAAAGGGTCAAAGAGTCTTTGCAAGAGATGCAATATGATTGTAGAAAAGGATGTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAATCAGGAAAACAAGATCAATCAGAGGAATCATCATCATCATCATCATCATCATCAAGTGTTTTGGTGCTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTTTAACTATGTCTGATAATCCAAGTACAAACTTCACCAACTTCTAA 681 0.3818 MPQRTNLSFFQNSDFKRLQQIPSEISFEFGINHDYLPFSTLDFSSSSQTSMSANSVKSSDQSKEVLQNNKTDQKSYIGVRKRPWGKFAAEIRDTTRGGKRVWLGTFDSAEEAALAYDQAAFSMRGDNAPLNFSVQRVKESLQEMQYDCRKGCSPALALKERHYNQRKLSSKGVKNNNKSGKQDQSEESSSSSSSSSSVLVLEDLGVEYLEQLLTMSDNPSTNFTNF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06594 226 MobiDBLite consensus disorder prediction 163 196 - -
Vivi1g06594 226 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Vivi1g06594 226 MobiDBLite consensus disorder prediction 169 196 - -
Vivi1g06594 226 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vivi1g06594 226 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vivi1g06594 226 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Vivi1g06594 226 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Vivi1g06594 226 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Vivi1g06594 226 PANTHER DNA-BINDING DOMAIN 51 214 IPR044808 GO:0003700|GO:0009873
Vivi1g06594 226 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vivi1g06594 226 FunFam Ethylene-responsive transcription factor 2 74 134 - -
Vivi1g06594 226 MobiDBLite consensus disorder prediction 50 70 - -
Vivi1g06594 226 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06594 Vivi-Chr1 152172491 152173171 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06594 68 221 AP2-EREBP Transcription Factor Family AT3G23240 54.777 5.32e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06594 AP2 1.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06594 1 152172491 152173171 Vivi1g06270 1 140763673 140765103 ECH
Vivi1g06594 1 152172491 152173171 Vivi1g06594 1 152172491 152173171 ECH