Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06590 ATGCCTCAAAGAACCAATCTCTCTTTCTTTCACCAGCAAAACCCTTCTGAAATTTCCTTCCAATCATTTGGTATTAATAATGATTATCATCCCTTTAGTACGATCGATTTCTCACCTAGTTCGCAGAAGCAGTTGTCTGCGAATTCCACGAAGTCATCTCAAGCTAAAGAAATATTATTGCAGAATAATAATATGGATCAAAAGTCGTATATAGGTGTAAGAAAAAGGCCTTGGGGGAAGTTTGCTGCAGAGATCAGAGACACAACAAGAAGAGGGAAAAGGGTTTGGCTTGGAACCTTTGATAGAGCTGAAGACGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTGATAATGGTCTTCTCAATTTTTCAGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGCCAAAAAGGATGTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAATCAAGAAAACAAGATCAATCAGAGGAATCATCATCATCATCATCATCAAGTGTGTTGGTGTTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAAGTATATCTGATAATCCAAGTACAAGCAACAACAGCTACTTCAAATCAAATTGTTAA 672 0.3661 MPQRTNLSFFHQQNPSEISFQSFGINNDYHPFSTIDFSPSSQKQLSANSTKSSQAKEILLQNNNMDQKSYIGVRKRPWGKFAAEIRDTTRRGKRVWLGTFDRAEDAALAYDQAAFSMRGDNGLLNFSVQRVKESLQEIQYDCQKGCSPALALKERHYNQRKLSSKGVKNNNKSRKQDQSEESSSSSSSSVLVLEDLGVEYLEQLLSISDNPSTSNNSYFKSNC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06590 223 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 FunFam Ethylene-responsive transcription factor 2 68 128 - -
Vivi1g06590 223 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Vivi1g06590 223 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Vivi1g06590 223 MobiDBLite consensus disorder prediction 160 188 - -
Vivi1g06590 223 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Vivi1g06590 223 PANTHER DNA-BINDING DOMAIN 46 209 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06590 Vivi-Chr1 152079521 152080192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06590 67 213 AP2-EREBP Transcription Factor Family AT3G23240 56.000 4.70e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06590 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06590 K14516 - gmx:100527364 209.149