Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06589 ATGCCTCAAAGAACCAATCTCTCTTCCTTTCATAACCCAGATTTCAAAAATTTGCAGCAAGACCCTTCTGAAATTTCCTTCCAGTCATTTGGTATTAATCATGATTATCTTCCCTTTCGTACTATCAATTTCTCATCGAGTTCGCAAACACTATTGTCTGCAAACTCGATGAAGTCAGCAAAAGCTAAAGAAATATTGCAGAATAATAAGATGGATCAAAATTCGTATATAGGTGTAAGAAAAAGGCCTTGGGGGAAGTTTTCTGCAGAGATTAGAGACACAACAAGAGGAGGGAAAAGGGTTTGGCTCGGAGCCTTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTTAATGAGAGGTGATAATGCTCTTCTCAATTTTTCAGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGCAAAGGATGTTCACCTGCACTTGCACTCAAGGAGAGACATTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAAGCAGGAAAACAAGATCAATCAGAGGAATCATCATCATCATCATCATCATCATCATCATCAGCAAGTGTGTTGGTGTTAGAAGATTTGGGAGTTGAATATCTTGAGCAACTTCTAAGTATATCTGATAATCCAAGTACAAGCAACGACAACAGCTACTTCAAATCAAATTGTTAA 708 0.3658 MPQRTNLSSFHNPDFKNLQQDPSEISFQSFGINHDYLPFRTINFSSSSQTLLSANSMKSAKAKEILQNNKMDQNSYIGVRKRPWGKFSAEIRDTTRGGKRVWLGAFDSAEDAALAYDQAAFLMRGDNALLNFSVQRVKESLQEIQYDCSKGCSPALALKERHYNQRKLSSKGVKNNNKAGKQDQSEESSSSSSSSSSSASVLVLEDLGVEYLEQLLSISDNPSTSNDNSYFKSNC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06589 235 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 MobiDBLite consensus disorder prediction 169 198 - -
Vivi1g06589 235 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Vivi1g06589 235 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 FunFam Ethylene-responsive transcription factor 2 74 134 - -
Vivi1g06589 235 CDD AP2 76 132 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Vivi1g06589 235 PANTHER DNA-BINDING DOMAIN 50 221 IPR044808 GO:0003700|GO:0009873
Vivi1g06589 235 MobiDBLite consensus disorder prediction 167 198 - -
Vivi1g06589 235 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06589 Vivi-Chr1 152051402 152052109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06589 73 224 AP2-EREBP Transcription Factor Family AT3G23240 52.258 6.32e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06589 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06589 K14516 - gmx:100527364 214.157