Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06587 ATGTCTCAAAGGATGAATCTGTCTTTCTTTCACAACCCAGATTTGGAAGTGCTGCAGCAAGACACTTCTGAAATTTCCTTCCAATCATTTGGTGTTAATCATGACTATCCTCCCTCTCGTAAGATTGATTTCTCAGCAAGTTCGCGAACCCTGTTGTCTGCGAACTCGATGAAGTCATCTCATGCTAAAGAAATATTGCAGAATAATAAGATGGATCAAAAGTCATATATAGGTGTAAGAAAAAGGCCTTGGGGGAAATTTGCTGCAGAGATCAGAGATACAACAAGAGGAGGGAAAAGGGTTTGGCTTGGAACCTTTGATAGAGCTGAAGACGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTGATAGTGCTCTTCTCAATTTTTCAGTTCAAAGGGTGAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTATCATCAAAAGGTGTAAAGAGTAATAATAAATCAGGAAAACAAGATCAATCAGAGGAATCATCATCATCATCATCATCAAGTGTTTTGGTGCTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTTTAACTATGTCTGACCAAAGTACAAGCAACAACAGCTACTTCAAGTCAATTAGTTAA 687 0.3828 MSQRMNLSFFHNPDLEVLQQDTSEISFQSFGVNHDYPPSRKIDFSASSRTLLSANSMKSSHAKEILQNNKMDQKSYIGVRKRPWGKFAAEIRDTTRGGKRVWLGTFDRAEDAALAYDQAAFSMRGDSALLNFSVQRVKESLQEIQYDCRKGSSPALALKERHYNQRKLSSKGVKSNNKSGKQDQSEESSSSSSSSVLVLEDLGVEYLEQLLTMSDQSTSNNSYFKSIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06587 228 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 MobiDBLite consensus disorder prediction 169 196 - -
Vivi1g06587 228 FunFam Ethylene-responsive transcription factor 2 74 134 - -
Vivi1g06587 228 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Vivi1g06587 228 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Vivi1g06587 228 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 MobiDBLite consensus disorder prediction 165 196 - -
Vivi1g06587 228 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vivi1g06587 228 PANTHER DNA-BINDING DOMAIN 58 217 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06587 Vivi-Chr1 152028804 152029490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06587 73 217 AP2-EREBP Transcription Factor Family AT3G23240 57.241 1.42e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g06587 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06587 K14516 - gmx:100811486 207.608