Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06575 ATGGAAGGAGTTTCGAATTCGACAAATGGGAATGTTGTTGATCAGATAAAGTATAGAGGAATTCGTAGGAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGATCCGACAAGGAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCAGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTTTAAACTTCCCTAATGAATATCAAGGTCCCAATTCATCATCTTCTTCATTACCTATGCCTCTTACAGTGTCTCATCCTCATCCTCCTCCTAATCATGATCATGATCATGATCCTAATCCTAATCTTAATCCTAATCCTTCTTCTTCTTCATCTTTTTCTTCTTACTCTGTTGATGATAACTTTGATTTTGGATTTTTGGATAATAAGTTGCTACAAGAATTCCTTCAAGAAGGAACACAGTGA 456 0.3772 MEGVSNSTNGNVVDQIKYRGIRRRPWGKYAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQGPNSSSSSLPMPLTVSHPHPPPNHDHDHDPNPNLNPNPSSSSSFSSYSVDDNFDFGFLDNKLLQEFLQEGTQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06575 151 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vivi1g06575 151 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vivi1g06575 151 MobiDBLite consensus disorder prediction 74 124 - -
Vivi1g06575 151 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vivi1g06575 151 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vivi1g06575 151 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vivi1g06575 151 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vivi1g06575 151 MobiDBLite consensus disorder prediction 76 92 - -
Vivi1g06575 151 PANTHER DNA-BINDING DOMAIN 16 126 IPR044808 GO:0003700|GO:0009873
Vivi1g06575 151 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vivi1g06575 151 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vivi1g06575 151 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06575 Vivi-Chr1 151590480 151591303 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06575 15 146 AP2-EREBP Transcription Factor Family AT3G23230 48.485 1.40e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g06575 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06575 - - cam:101502737 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03870 6 134596025 134596441 Vivi1g06575 1 151590480 151591303 PCT