Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06572 ATGGAAGGAGTTTCGAATTCGACAAATGGAAATGTTGTTGATCAGATAAAGTATAGAGGAATTCGTAGGAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGATCCGACAAGGAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCGGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTTTAAACTTCCCTAATGAATATCAAGGTCCTAATTCATCATCTTCTTCATTACCTATGCCTCTTACAGTGCCTCATCCTCCTCCTAATCATGATCATGATCATGATCATGATCATGATCCTAATCCTAATCTTAATCCTAATCCTTCTTCTTCTTCATCTTTTTCTTCTTACTCTGTTGATGATAACTTTGATTTTGGATTTTTGGATAATAAGTTGCTACAAGAATTCCTTCAAGAAGGAACACAGTGA 462 0.3745 MEGVSNSTNGNVVDQIKYRGIRRRPWGKYAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQGPNSSSSSLPMPLTVPHPPPNHDHDHDHDHDPNPNLNPNPSSSSSFSSYSVDDNFDFGFLDNKLLQEFLQEGTQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06572 153 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vivi1g06572 153 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 MobiDBLite consensus disorder prediction 74 127 - -
Vivi1g06572 153 MobiDBLite consensus disorder prediction 113 127 - -
Vivi1g06572 153 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 MobiDBLite consensus disorder prediction 98 112 - -
Vivi1g06572 153 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vivi1g06572 153 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vivi1g06572 153 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Vivi1g06572 153 PANTHER DNA-BINDING DOMAIN 16 128 IPR044808 GO:0003700|GO:0009873
Vivi1g06572 153 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06572 Vivi-Chr1 151481218 151482292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06572 15 148 AP2-EREBP Transcription Factor Family AT3G23230 47.761 3.40e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g06572 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06572 - - cam:101502737 166.007