Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06571 ATGTCTTCTTTTTTGTTCACACAAGACATGGATTTTGATTCTTCATTCTTCCAATACCAAAACCTTAACTCTTCATTTTCAGAACCTTTTTCATGGGAAGATTTCTTCATTTTCAATGAAGACATCACAAACAATAACCTCACCATTCCATTGAACTTCAATGATCAAATCACACAAGAAATTTCATCCAATTCCAATTCTAATTCCATTTCCAACACTTCAGGTTCTCAAGCAAGTACAGAATCACAAGAAGTTTCATCCAATTCAACTCATGTAGCACAATCATCATCACTATCATCACCTAAGAGGCCATATAGAGGAGTTAGGAGAAGACCGTGGGGGAAATTCGCAGCCGAAATAAGAGATTCAACGCGAAACGGGGTTCGAGTTTGGATTGGAACATTTGATACTGCTGAAGAAGCTGCATTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCAATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGAGAATCATTGAAAGACATGGTGAACAAGTGTTGGGAGAAAGATGGTTCTTCTCCTGTTTTGGCACTAAAGAAGAAACACACTATGAAAAGAAAGTCTAAAGCAAATAATTCCAAGAAGACCAAAAGGGTAGAAAGGGAAATGAAAAATGTTGTTTCAGAAAATGTTTTGGTGTTGGAAGATTTGGGTTCTGAATATCTAGACCAACTTCTTAGCTTGAGTACTTTTTAG 729 0.3676 MSSFLFTQDMDFDSSFFQYQNLNSSFSEPFSWEDFFIFNEDITNNNLTIPLNFNDQITQEISSNSNSNSISNTSGSQASTESQEVSSNSTHVAQSSSLSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAALSTRGSMAVLNFPEQVVRESLKDMVNKCWEKDGSSPVLALKKKHTMKRKSKANNSKKTKRVEREMKNVVSENVLVLEDLGSEYLDQLLSLSTF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06571 242 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 MobiDBLite consensus disorder prediction 62 102 - -
Vivi1g06571 242 MobiDBLite consensus disorder prediction 192 211 - -
Vivi1g06571 242 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 CDD AP2 105 164 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Vivi1g06571 242 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677
Vivi1g06571 242 MobiDBLite consensus disorder prediction 62 108 - -
Vivi1g06571 242 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Vivi1g06571 242 PANTHER DNA-BINDING DOMAIN 69 237 IPR044808 GO:0003700|GO:0009873
Vivi1g06571 242 FunFam Ethylene-responsive transcription factor 2 103 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06571 Vivi-Chr1 151352436 151353577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06571 77 240 AP2-EREBP Transcription Factor Family AT3G23240 53.939 2.13e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g06571 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06571 K14516 - gmx:100784784 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06571 1 151352436 151353577 Vivi1g06571 1 151352436 151353577 ECH