Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06563 ATGCCGTCGCTACTCTCTCCCGGCAAAATCCACATGCTCGAGATAGAGAATTTCAAATCCTACAAGGGTTTGCAAAGTATCGGTCCCTTCTTTGACTTCACTGCAATCATTGGTCCCAACGGCGCCGGAAAATCTAACCTAATGGACGCAATCAGCTTCGTTCTTGGTGTTAGAACCGGCCAACTCCGTGGTGCTCAGTTGAAGGATCTCATTTACGCTTTCGATGATAAAGATAAAGAGCAGAAAGGAAGACGAGCCTTCGTTCGTATGGTTTATCAACTCGCCAACGAATCTGAAATCAGGTTCACCAGAACTATCACCTCAGCCGGAGCAAGTGAGTACCGCATCGACGATAGTGTCGTTACTTGGGATGCCTACAATGCTAGACTCAAATCGCTAGGCATTCTTGTTAAGGCTCGCAACTTTCTGGTTTTTCAGGGTGATGTGGAATCCATTGCGTCGAAGAATCCTAAGGAGCTTACTGGCCTTATTGAGCAGATATCTGGATCTGACGAGCTTAAACGAGACTATGAGGAGTTTGAAGAAGAGAAAGCTACTGCTGAGGAGAAATCGGCACTTGTTTATCAAAAGAAAAAGACAATGGTTATGGAGAGGAAGCAGAAGAAAGAACAAAAGGAAGAGGCAGAGAAACATATTCGACTCCAAGATGAATTGAAATCTGTGAAAAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATATTGTTAATACAACTGAGGACCTTGAAGTTGAAAAAAAAAATCGTGAAGGTGTTATTGAAGAATTAGAAAATTTTGAACATGAATCCAGTAAGAAGAAAAAAGAGCAAGCCAAATATCTGAAAGAAGTTACACTACGTGAGAAGAAAATAACTGAGAAAGGCAACAAACTTGACAAAACTCAACCAGAGCTTCTTAAATTAAAGGAGGAAATGTCTCGCATTAGTACAAAAATTAAAAAAGGGAACAAGGAGCTTGGCAAAAAAAGGGAACAACAAAATAAGCATGACAAGGATATAGCAGTGCTAGAGAATGATATTAAGGATCTTACAGCGAAAGTGGAAGACGTGCAGAAAAAGAGTCGAAATGTTGGTGATCAGCTCAAGTTAGATGGCAATGACTTGGAAGAATATTATAGAATAAAAGAGGAGGCTGGGATGAAAACCGCAAAGCTTAAAGAGGAAAAAGAACTGTTAGATAGGCAGCAACATGCTGACACTGAAGCTCAAAAGAATTTGGAAGAGAATCTTCAACAATTAGAAAGCCGTGAATCTGAGCTGGATTCACAGGAAAAAAAAATGCGAGAAAGGCTCAAAAAAATTCTTGATAGTTCTGCAAAGAATAGGGATGATGTTGAAAATTTGAATACAGAACTGCGTGTGATGAAAGAAAAACATAATGAGTCCAAGAGAAAATATGATTACTTGAAGATAAGAATTGCCGAAGTAGAAAATGATCTACGTGAATTGAAGGCCAATAGGCATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGATTGTTTCAAGGAGTCCATGGTCGCATGACCGATCTTTGTAGGCCAACGCAGAAGAAGTATAACTTAGCCGTTACTGTTGCTATGGGTAAATTAATGGACGCTGTTGTTGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCAATTCGAGTGAAGCCAATAATGGAAAGATTACGCACATTAGGTGGTACAGCACGGCTGGTTTTTGATGTGATTCAGTTTGATCCCCCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTTGAGAAAGCCAAACTTTTAAGCTGGAGCGGAGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTTTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAATATGAAGCATATGTTAAGAAGAAAGAGCAGTATGAATCCGAGCTGGCAGAGCTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAACAGAGGGGAAAAAAAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGAGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGAGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTAGAGAAGTTAAGAGATGCTGTTTTAAAGAGGAGTAAAGAATTACTTACTCTTGAGAAAAGGATAAATGAAATTACTGATCGGATATACAGAGACTTCAGCAAGTCAGTTGGTGTTGCAAATATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAAGCTGAGTAGCCAACTTTCAAAGTTAAAATATCAGCTGGAGTATGAGCAGAATCGTGACATGAGTTCAAGAATTCAAGAATTGGAATCTTCTATAAGTGCTTTGGAGAATGATTTACAACGTGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCAGAGAAGGTTATCGAAGAGATCAATCAATTGAGGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAGGAATGGAAGAAGAAAAATTCTGCAGCCACAACAAACTTATCCAAACTGAATCGTCAGATAAGCTCAAAGGAGGCACAGATTGAGCAGATGTTTGGGCAAAAGCAGGAGATAAAAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAACCATATCAGATCCTATGGATACCGATAGCTCAACGCCGGGTCCAGTTTATGACTTTGATCAACTCAGTAGGCCACTAAAAGATAGGAAACCCTCTGGCAGGGATAAAATAGAGGTAGATTTTAAGAAAAAAATGGATGCATTGATATCTGAGATCGAAAGAACAGCACCCAATTTGAAGGCATTGGACCAGTATGAAGCTCTGCTTGAAAAAGAAAGAGTTGTAACTGAAGAGTTTGAAGCTGTGAGGAAAGAAGAGAAGGAAAAAGCAGACAGGTTCAATGTAGTAAAGCAGAAGAGATATGACATGTTCATGGATGCTTTCAACCATATAGCTGGTAATATAGATAAAATTTACAAACAACTCACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGATGATGATCCGTTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAACAACTGTCTGGTGGTGAAAAGACTGTTGCTGCACTTGCATTGCTATTCTCTATCCACAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTCGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGATGCTGATGGCGGAAATGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTTCAGGGACTCTGGAAGAGGTTGTTCGAGTACTCTCACATTTGATCTGAGCAAGTATCAGGAGCCCTAA 3654 0.4012 MPSLLSPGKIHMLEIENFKSYKGLQSIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKDKEQKGRRAFVRMVYQLANESEIRFTRTITSAGASEYRIDDSVVTWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEEFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDELKSVKKEHFLWQLFNIENDIVNTTEDLEVEKKNREGVIEELENFEHESSKKKKEQAKYLKEVTLREKKITEKGNKLDKTQPELLKLKEEMSRISTKIKKGNKELGKKREQQNKHDKDIAVLENDIKDLTAKVEDVQKKSRNVGDQLKLDGNDLEEYYRIKEEAGMKTAKLKEEKELLDRQQHADTEAQKNLEENLQQLESRESELDSQEKKMRERLKKILDSSAKNRDDVENLNTELRVMKEKHNESKRKYDYLKIRIAEVENDLRELKANRHENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKPIMERLRTLGGTARLVFDVIQFDPPLEKAILFAVGNTLVCEDLEKAKLLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKYEAYVKKKEQYESELAELGSIRDMHLKESETEGKKSGLEKKIQYAEIEKRSIEDKLSNFSLEKRTIKEEIKRISPELEKLRDAVLKRSKELLTLEKRINEITDRIYRDFSKSVGVANIREYEENRLKDAQNVAEERLKLSSQLSKLKYQLEYEQNRDMSSRIQELESSISALENDLQRVQNKEAEAKLAAEKVIEEINQLRDEAKEWKSKSEDCEKEIQEWKKKNSAATTNLSKLNRQISSKEAQIEQMFGQKQEIKEKCELEQISLPTISDPMDTDSSTPGPVYDFDQLSRPLKDRKPSGRDKIEVDFKKKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEKEKADRFNVVKQKRYDMFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGNGFQSIVISLKDSFYDKAEALVGVFRDSGRGCSSTLTFDLSKYQEP 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06563 1217 Pfam RecF/RecN/SMC N terminal domain 10 1197 IPR003395 -
Vivi1g06563 1217 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vivi1g06563 1217 Coils Coil 384 439 - -
Vivi1g06563 1217 Coils Coil 709 729 - -
Vivi1g06563 1217 Coils Coil 829 933 - -
Vivi1g06563 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vivi1g06563 1217 Gene3D - 949 1216 IPR027417 -
Vivi1g06563 1217 Gene3D - 8 230 IPR027417 -
Vivi1g06563 1217 Coils Coil 307 327 - -
Vivi1g06563 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vivi1g06563 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1216 - -
Vivi1g06563 1217 MobiDBLite consensus disorder prediction 943 975 - -
Vivi1g06563 1217 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Vivi1g06563 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 269 IPR027417 -
Vivi1g06563 1217 Coils Coil 170 231 - -
Vivi1g06563 1217 Coils Coil 335 369 - -
Vivi1g06563 1217 Gene3D - 479 586 - -
Vivi1g06563 1217 Coils Coil 454 502 - -
Vivi1g06563 1217 Coils Coil 251 278 - -
Vivi1g06563 1217 Gene3D - 587 659 - -
Vivi1g06563 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1200 IPR027417 -
Vivi1g06563 1217 MobiDBLite consensus disorder prediction 943 959 - -
Vivi1g06563 1217 PIRSF SMC 8 1216 IPR024704 GO:0005524|GO:0016887
Vivi1g06563 1217 Pfam SMC proteins Flexible Hinge Domain 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06563 Vivi-Chr1 151270741 151288239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06563 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 2.91e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06563 K06636 - gmx:100791953 1912.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06563 1 151270741 151288239 Vivi1g06563 1 151270741 151288239 ECH