LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06563	ATGCCGTCGCTACTCTCTCCCGGCAAAATCCACATGCTCGAGATAGAGAATTTCAAATCCTACAAGGGTTTGCAAAGTATCGGTCCCTTCTTTGACTTCACTGCAATCATTGGTCCCAACGGCGCCGGAAAATCTAACCTAATGGACGCAATCAGCTTCGTTCTTGGTGTTAGAACCGGCCAACTCCGTGGTGCTCAGTTGAAGGATCTCATTTACGCTTTCGATGATAAAGATAAAGAGCAGAAAGGAAGACGAGCCTTCGTTCGTATGGTTTATCAACTCGCCAACGAATCTGAAATCAGGTTCACCAGAACTATCACCTCAGCCGGAGCAAGTGAGTACCGCATCGACGATAGTGTCGTTACTTGGGATGCCTACAATGCTAGACTCAAATCGCTAGGCATTCTTGTTAAGGCTCGCAACTTTCTGGTTTTTCAGGGTGATGTGGAATCCATTGCGTCGAAGAATCCTAAGGAGCTTACTGGCCTTATTGAGCAGATATCTGGATCTGACGAGCTTAAACGAGACTATGAGGAGTTTGAAGAAGAGAAAGCTACTGCTGAGGAGAAATCGGCACTTGTTTATCAAAAGAAAAAGACAATGGTTATGGAGAGGAAGCAGAAGAAAGAACAAAAGGAAGAGGCAGAGAAACATATTCGACTCCAAGATGAATTGAAATCTGTGAAAAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATATTGTTAATACAACTGAGGACCTTGAAGTTGAAAAAAAAAATCGTGAAGGTGTTATTGAAGAATTAGAAAATTTTGAACATGAATCCAGTAAGAAGAAAAAAGAGCAAGCCAAATATCTGAAAGAAGTTACACTACGTGAGAAGAAAATAACTGAGAAAGGCAACAAACTTGACAAAACTCAACCAGAGCTTCTTAAATTAAAGGAGGAAATGTCTCGCATTAGTACAAAAATTAAAAAAGGGAACAAGGAGCTTGGCAAAAAAAGGGAACAACAAAATAAGCATGACAAGGATATAGCAGTGCTAGAGAATGATATTAAGGATCTTACAGCGAAAGTGGAAGACGTGCAGAAAAAGAGTCGAAATGTTGGTGATCAGCTCAAGTTAGATGGCAATGACTTGGAAGAATATTATAGAATAAAAGAGGAGGCTGGGATGAAAACCGCAAAGCTTAAAGAGGAAAAAGAACTGTTAGATAGGCAGCAACATGCTGACACTGAAGCTCAAAAGAATTTGGAAGAGAATCTTCAACAATTAGAAAGCCGTGAATCTGAGCTGGATTCACAGGAAAAAAAAATGCGAGAAAGGCTCAAAAAAATTCTTGATAGTTCTGCAAAGAATAGGGATGATGTTGAAAATTTGAATACAGAACTGCGTGTGATGAAAGAAAAACATAATGAGTCCAAGAGAAAATATGATTACTTGAAGATAAGAATTGCCGAAGTAGAAAATGATCTACGTGAATTGAAGGCCAATAGGCATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGATTGTTTCAAGGAGTCCATGGTCGCATGACCGATCTTTGTAGGCCAACGCAGAAGAAGTATAACTTAGCCGTTACTGTTGCTATGGGTAAATTAATGGACGCTGTTGTTGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCAATTCGAGTGAAGCCAATAATGGAAAGATTACGCACATTAGGTGGTACAGCACGGCTGGTTTTTGATGTGATTCAGTTTGATCCCCCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTTGAGAAAGCCAAACTTTTAAGCTGGAGCGGAGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTTTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAATATGAAGCATATGTTAAGAAGAAAGAGCAGTATGAATCCGAGCTGGCAGAGCTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAACAGAGGGGAAAAAAAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGAGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGAGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTAGAGAAGTTAAGAGATGCTGTTTTAAAGAGGAGTAAAGAATTACTTACTCTTGAGAAAAGGATAAATGAAATTACTGATCGGATATACAGAGACTTCAGCAAGTCAGTTGGTGTTGCAAATATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAAGCTGAGTAGCCAACTTTCAAAGTTAAAATATCAGCTGGAGTATGAGCAGAATCGTGACATGAGTTCAAGAATTCAAGAATTGGAATCTTCTATAAGTGCTTTGGAGAATGATTTACAACGTGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCAGAGAAGGTTATCGAAGAGATCAATCAATTGAGGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAGGAATGGAAGAAGAAAAATTCTGCAGCCACAACAAACTTATCCAAACTGAATCGTCAGATAAGCTCAAAGGAGGCACAGATTGAGCAGATGTTTGGGCAAAAGCAGGAGATAAAAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAACCATATCAGATCCTATGGATACCGATAGCTCAACGCCGGGTCCAGTTTATGACTTTGATCAACTCAGTAGGCCACTAAAAGATAGGAAACCCTCTGGCAGGGATAAAATAGAGGTAGATTTTAAGAAAAAAATGGATGCATTGATATCTGAGATCGAAAGAACAGCACCCAATTTGAAGGCATTGGACCAGTATGAAGCTCTGCTTGAAAAAGAAAGAGTTGTAACTGAAGAGTTTGAAGCTGTGAGGAAAGAAGAGAAGGAAAAAGCAGACAGGTTCAATGTAGTAAAGCAGAAGAGATATGACATGTTCATGGATGCTTTCAACCATATAGCTGGTAATATAGATAAAATTTACAAACAACTCACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGATGATGATCCGTTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAACAACTGTCTGGTGGTGAAAAGACTGTTGCTGCACTTGCATTGCTATTCTCTATCCACAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTCGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGATGCTGATGGCGGAAATGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTTCAGGGACTCTGGAAGAGGTTGTTCGAGTACTCTCACATTTGATCTGAGCAAGTATCAGGAGCCCTAA	3654	0.4012	MPSLLSPGKIHMLEIENFKSYKGLQSIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKDKEQKGRRAFVRMVYQLANESEIRFTRTITSAGASEYRIDDSVVTWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEEFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDELKSVKKEHFLWQLFNIENDIVNTTEDLEVEKKNREGVIEELENFEHESSKKKKEQAKYLKEVTLREKKITEKGNKLDKTQPELLKLKEEMSRISTKIKKGNKELGKKREQQNKHDKDIAVLENDIKDLTAKVEDVQKKSRNVGDQLKLDGNDLEEYYRIKEEAGMKTAKLKEEKELLDRQQHADTEAQKNLEENLQQLESRESELDSQEKKMRERLKKILDSSAKNRDDVENLNTELRVMKEKHNESKRKYDYLKIRIAEVENDLRELKANRHENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKPIMERLRTLGGTARLVFDVIQFDPPLEKAILFAVGNTLVCEDLEKAKLLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKYEAYVKKKEQYESELAELGSIRDMHLKESETEGKKSGLEKKIQYAEIEKRSIEDKLSNFSLEKRTIKEEIKRISPELEKLRDAVLKRSKELLTLEKRINEITDRIYRDFSKSVGVANIREYEENRLKDAQNVAEERLKLSSQLSKLKYQLEYEQNRDMSSRIQELESSISALENDLQRVQNKEAEAKLAAEKVIEEINQLRDEAKEWKSKSEDCEKEIQEWKKKNSAATTNLSKLNRQISSKEAQIEQMFGQKQEIKEKCELEQISLPTISDPMDTDSSTPGPVYDFDQLSRPLKDRKPSGRDKIEVDFKKKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEKEKADRFNVVKQKRYDMFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGNGFQSIVISLKDSFYDKAEALVGVFRDSGRGCSSTLTFDLSKYQEP	1217

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g06563	1217	Pfam	RecF/RecN/SMC N terminal domain	10	1197	IPR003395	-
	Vivi1g06563	1217	SUPERFAMILY	Smc hinge domain	481	681	IPR036277	GO:0005515\|GO:0005524\|GO:0005694\|GO:0051276
	Vivi1g06563	1217	Coils	Coil	384	439	-	-
	Vivi1g06563	1217	Coils	Coil	709	729	-	-
	Vivi1g06563	1217	Coils	Coil	829	933	-	-
	Vivi1g06563	1217	CDD	ABC_SMC1_euk	10	157	IPR028468	GO:0005524\|GO:0007062\|GO:0008278\|GO:0016887
	Vivi1g06563	1217	Gene3D	-	949	1216	IPR027417	-
	Vivi1g06563	1217	Gene3D	-	8	230	IPR027417	-
	Vivi1g06563	1217	Coils	Coil	307	327	-	-
	Vivi1g06563	1217	SMART	SMC_hinge_2	517	633	IPR010935	GO:0005515\|GO:0005524\|GO:0005694\|GO:0051276

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06563	Vivi-Chr1	151270741	151288239	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g06563	8	114	Structural Maintenance of Chromosomes family	AT5G61460	32.456	2.91e-07	53.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g06563	K06636		-	gmx:100791953	1912.5

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g06563	1	151270741	151288239	Vivi1g06563	1	151270741	151288239	ECH

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