Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06562 ATGATAAAACATGTGCATGTCGAGTCTAATAAGTGGTGTATTTTGGTGTTATCAAACTCTCCCACACTTAAACTTTTGTTTGTCCTTAAGCAAAACTCTGCTTACAAGAAGAAAAACAGTAGCACTTGGATACTTAACTTAGGCTTTAAACTCTCTTTTGGCCAATGTTCTGTTAACAGTTCTCTTGCTGGTTTCCTACCTGTTGCAATCTCATGTCTAGAAACATCTCATGGCCACACCGACCGCGTTTGGAACATTACCAAACGAGCCATCAGCGTCGAAGTCAACAAACAGGTGAGGAACAAGATCTTGAGGAAGAGGATTCATGTTCGAGTGGAGCATGTTATTCCGTCTAGGTGCACTGAGGAATTCCGGTTGAGGAAGATTCAGAATGATAAGTTGAAGGCTGAGGCAAAGGCAAATGGAGAGGTGATCAGCACCAAGCGCAAGCCGGAGGGTCCCAAACCTGGTTTCAAGGTGGAGGGTGCTACATTGGAGATTGTTACTCCAATTCCATATGATGTTGTTAATGATCTTAAAGGAGGGTATTAG 552 0.4293 MIKHVHVESNKWCILVLSNSPTLKLLFVLKQNSAYKKKNSSTWILNLGFKLSFGQCSVNSSLAGFLPVAISCLETSHGHTDRVWNITKRAISVEVNKQVRNKILRKRIHVRVEHVIPSRCTEEFRLRKIQNDKLKAEAKANGEVISTKRKPEGPKPGFKVEGATLEIVTPIPYDVVNDLKGGY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06562 183 PANTHER 60S RIBOSOMAL PROTEIN L21 77 182 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vivi1g06562 183 FunFam 60S ribosomal protein L21 118 177 - -
Vivi1g06562 183 Pfam Ribosomal protein L21e 77 120 IPR001147 GO:0003735|GO:0005840|GO:0006412
Vivi1g06562 183 SUPERFAMILY Translation proteins SH3-like domain 77 118 IPR008991 -
Vivi1g06562 183 Gene3D Ribosomal protein L21 72 116 IPR036948 GO:0003735|GO:0005840|GO:0006412
Vivi1g06562 183 Gene3D - 118 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06562 Vivi-Chr1 151256400 151258186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06562 77 183 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 77.570 1.66e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06562 K02889 - qsa:O6P43_005799 197.978