Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06557 ATGCATATAGGTCAAACGAAAACAGCTTCAGTAAAATGTCTGATCAACAGCATTTCTCGATTCGTTCTCTTGGTTTCTTGCCAAACAGTGAAACCTATACCCTTCCAGAAGATCTGCAATAATATGGTCGGTGTATTAAAGCGTTTGAAGCCAGTGCTCGATGACATTATGGATTACAATATTCCTTTACATGAAAATTTATGTATAGTATGCGAAGAATTAGATATACTGGTTAATGAAGCAAGAGGCTTCATCGAAAAATGGAGTCCTAAGATGAGCAAGATTCACAGTGTTTTACAAAGTGGAACACTGTTGATCAAGATACAGAACACTTCACTTGACATTTGTCACATGATAGTTAAATCGTTACAGTCACCTCCATCTGCATCGGTTTTGGCGAACCTCCAGCATTATATCGAAGAAATTCAGTGTCTCAAGAAGGAAGCAGCGATGGTTTTTATAGAAAAGGAACTGGGAAACCGAAATATTGAACCTTGCAACGAGAATCTAAAGGAAATTATTGAGTTACTGAACTTGACATCCAACCAGGAGCTTTTGAAAGAAACGATTGCTGTGGAGAAAGAAAGATTGAACGCTGAAGAACAGAAAATGAAAGGAAACATGGAAGAGATCAATGAAGTTGTGAACCTTGTTCGCAACTTACGTGATTATGTGGTTAAAACCGAGTGCTTTGCAGTTGAAAGCGATGTCTCTTTCCCTCCATACTTTCGCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCGGGTCAAACATACGAGAGGAAATCCATTCAAATGTGGCTTGATAATGGGCTGACTGTTTGTCCGAAGACTCGTCAAAGATTGACTCATACAAATCTCATTCCCAATTATACCGTCAAAGCTATGATCGCAACTTGGTCCGAGGAAAATAACACCAATCGTTTGAGTAACTCTGAGCATAATCATAATACTGGAAATGTATTTGAAGAACAAAAGGCCGATAATTCTTTCGGATCACATGTAGAAATCGAAAAGTGGGAGCTACAATCCCCGTATATTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTCGCAGTTTCGAAAGATGTGTCAAGGATGTCCGATAAGCATCAAAATGTGAAGGTGTCGTCCATAGATCTGGGAGCGATGGAAAATGGGAGAAATAGTACCAGTAATACTACTAATAGTTATTCAAGAGTTGATTCTCATCTTGTGCCAAACTCGGGATCGAGTGAATTGACCACATCATCTCATGTCAATACATTGATCAAAGACCTCCAAAGCCAATCAGCTGAAGCGCAAACTGCGGCCGCAGAAGAATTGAGGCTCCTTACAAAGCATAACACAGAAAACCGTATCATTGTAGGGCAATGTGGCGCTGTTACACATTTACTTTCTCTGCTATATTCAAACGGGAAAGTAACGCAAGAGCACGCCGTGACAGCACTGCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCGGGAGCTATAGAACCCCTTATCCATGTTTTAAAGACAGGAAACGACGGTGCCAAGGAGAATTCTGCAGCAGCGCTATTCAGCCTCTCTGTAATGGAAAATGGTAAAGTGAAAATCGGCCGTTCCGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAAGATGCTGCTACTGCTTTATATAACCTCTCAATATTTCACGATAATAAAGCTCGTATAGTTCTAGCTGGAGCTGTGCCATTTCTGGTTCGGTTAACGGATCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCGACGATTCCCGAAGGAAGGTTGGAAATTGCAAGAGAAGGTGGCATTCCTTCGTTAGTTGAAATCGTTGAATCGGGTTCTCAGAGAGGAAAGGAAAACGCTGCGTCCATTCTCTTACAGTTATGCCTTCATAGTTCGAGGTTTTGTACACTTGTTTTACAAGAAGGAGCCGTACCTCCTCTAGTTGCATTGTCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGCCACTTTCGTAATCAGCGGGAAGGAGCTAAGACGAAGGGAAAATCTTGA 2154 0.4127 MHIGQTKTASVKCLINSISRFVLLVSCQTVKPIPFQKICNNMVGVLKRLKPVLDDIMDYNIPLHENLCIVCEELDILVNEARGFIEKWSPKMSKIHSVLQSGTLLIKIQNTSLDICHMIVKSLQSPPSASVLANLQHYIEEIQCLKKEAAMVFIEKELGNRNIEPCNENLKEIIELLNLTSNQELLKETIAVEKERLNAEEQKMKGNMEEINEVVNLVRNLRDYVVKTECFAVESDVSFPPYFRCPLSLELMLDPVIVASGQTYERKSIQMWLDNGLTVCPKTRQRLTHTNLIPNYTVKAMIATWSEENNTNRLSNSEHNHNTGNVFEEQKADNSFGSHVEIEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRMSDKHQNVKVSSIDLGAMENGRNSTSNTTNSYSRVDSHLVPNSGSSELTTSSHVNTLIKDLQSQSAEAQTAAAEELRLLTKHNTENRIIVGQCGAVTHLLSLLYSNGKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKVKIGRSGAVKALVELLASGTLRGKKDAATALYNLSIFHDNKARIVLAGAVPFLVRLTDPADGMVDKAVALLSNLSTIPEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAKTKGKS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06557 717 Gene3D - 403 506 IPR011989 -
Vivi1g06557 717 Gene3D - 507 714 IPR011989 -
Vivi1g06557 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 472 514 IPR000225 GO:0005515
Vivi1g06557 717 Coils Coil 182 214 - -
Vivi1g06557 717 CDD RING-Ubox_PUB 240 292 IPR045210 -
Vivi1g06557 717 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Vivi1g06557 717 Pfam U-box domain 240 310 IPR003613 GO:0004842|GO:0016567
Vivi1g06557 717 SUPERFAMILY ARM repeat 428 704 IPR016024 -
Vivi1g06557 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 323 IPR013083 -
Vivi1g06557 717 SMART arm_5 584 623 IPR000225 GO:0005515
Vivi1g06557 717 SMART arm_5 624 664 IPR000225 GO:0005515
Vivi1g06557 717 SMART arm_5 461 501 IPR000225 GO:0005515
Vivi1g06557 717 SMART arm_5 543 583 IPR000225 GO:0005515
Vivi1g06557 717 SMART arm_5 502 542 IPR000225 GO:0005515
Vivi1g06557 717 Coils Coil 694 714 - -
Vivi1g06557 717 FunFam RING-type E3 ubiquitin transferase 239 311 - -
Vivi1g06557 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515
Vivi1g06557 717 SUPERFAMILY RING/U-box 237 312 - -
Vivi1g06557 717 PANTHER U BOX DOMAIN-CONTAINING 36 705 - -
Vivi1g06557 717 FunFam RING-type E3 ubiquitin transferase 417 710 - -
Vivi1g06557 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 636 IPR000225 GO:0005515
Vivi1g06557 717 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Vivi1g06557 717 Pfam Armadillo/beta-catenin-like repeat 549 582 IPR000225 GO:0005515
Vivi1g06557 717 Pfam Armadillo/beta-catenin-like repeat 461 500 IPR000225 GO:0005515
Vivi1g06557 717 Pfam Armadillo/beta-catenin-like repeat 502 541 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06557 Vivi-Chr1 151116067 151121182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06557 11 717 U-box Gene Family AT3G54790 51.507 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06557 - - mtr:25484253 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06557 1 151116067 151121182 Vivi1g06557 1 151116067 151121182 ECH