Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06548 ATGGGTCTTAGAGATGTTGGTGCTTCACTTCCACCCGGGTTTAGGTTTTATCCAAGTGATGAAGAATTAGTCCTTCATTACCTTTTGAAGAAAATCACAAATGAGAATGTTATCAAAGGTACCTTAGAGGAAATCGACTTACACACATGCGAACCATGGCAACTACCTGAAGTGGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATTCCACAGGCTTTAGGACCAATAGGGCTACGACATCTGGATACTGGAAAGCGACGGGGAAAGATCGAACGGTGTATGATCCAATCACTCGTGAGGTTGTAGGGATGAGAAAAACTCTTGTGTTCTATAGGAATAGAGCTCCTAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTCGGTTGGAAACCCCACATATGCCACCTAAGGAAGACTGGGTATTGTGTAGAGTATTTCATAAAGGAAAAACAGAAAACAATGGGAAGATAAGTCCACAAGACATGTATGAAACCATAGCTCCATCCTTAACCAACCAAACAATGCCAATTGGTTATAACTATAACCAATTTGCTTCTATGTCATCATCCATGACAACTCATGATTACAATCAAAATGATTCTTTGTTGAATCTCCTTCAATTATCCAAGGAAACAAACACCAATTGTAGTAGTATTACTCAAATTAGTCCTAAATGTGATGATGCATATGGATTCTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGAGTCATCAAACTTGGAAGGAATTAGATTCGAGGTTGATAATAATAATAGTAGTATGGTCTTGATATAA 828 0.3889 MGLRDVGASLPPGFRFYPSDEELVLHYLLKKITNENVIKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYSTGFRTNRATTSGYWKATGKDRTVYDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNGKISPQDMYETIAPSLTNQTMPIGYNYNQFASMSSSMTTHDYNQNDSLLNLLQLSKETNTNCSSITQISPKCDDAYGFLWDMDLEDHHDGVESSNLEGIRFEVDNNNSSMVLI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06548 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vivi1g06548 275 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Vivi1g06548 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vivi1g06548 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vivi1g06548 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06548 Vivi-Chr1 150783889 150787430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06548 9 171 NAC Transcription Factor Family AT1G76420 56.886 9.31e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g06548 NAM 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06548 - - gmx:100783645 418.698