Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06506 ATGCTTAGAGAGAGAAAGAGAGAAAGAGAGAAAGAGAATTCTAGAGAGAGAAAGTTCATGGAAGTTGCAGGTCTGAAAAAGGAAGAGAAGATGGTGTTTGATGAAACTGAACTGACGTTGGGATTGCCTGGAAATGGAAGCAAAGTAACAACAGAAGTAGTAGTAAGAAAGAGAGGTTTCAGTGAAACTGAAAGTGAGAGTGAGAATGAAAGCGAAATAACCTCAGTGGATTTGAAGCTTAATCTCTCTCCCAAAGAAAGTGCAGCAGATCCACAATTTAAGATTAAGGAGAAGTCTCTTCTCGTTTCTGATTCTGGCACCAAACCTCCTGCTAAGGCGCAAGTGGTGGGGTGGCCACCGGTGAGGTCATTCAGGAAGAACATGTTTGCAGCCCAAAAGAGCAGTGGTGAAGAAGCCAAAAAGAAAAGCAGTGATGGTCCTAATGCAATAACCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTTCGCAAAATAGACCTCAAAATGTACAAGAGTTACCCAGAGCTTTCTGATGCCTTAGCAAAAATGTTCAACTCCTTCACCACAGGAAATTGTGAATCCCAAGGAATCAAGGATTTCATGAATGAAAGTAACAAGTTGATGGATCTATTGAATAGCTCTGACTATGTTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATGGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTTGCACCAAGAGCCATGGAAAAATGCAAGAACAGAAGCTAG 810 0.416 MLRERKREREKENSRERKFMEVAGLKKEEKMVFDETELTLGLPGNGSKVTTEVVVRKRGFSETESESENESEITSVDLKLNLSPKESAADPQFKIKEKSLLVSDSGTKPPAKAQVVGWPPVRSFRKNMFAAQKSSGEEAKKKSSDGPNAITFVKVSMDGAPYLRKIDLKMYKSYPELSDALAKMFNSFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFMESCKRLRIMKGKEAIGLAPRAMEKCKNRS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06506 269 ProSiteProfiles PB1 domain profile. 150 251 IPR000270 GO:0005515
Vivi1g06506 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 256 IPR003311 GO:0005634|GO:0006355
Vivi1g06506 269 SUPERFAMILY CAD & PB1 domains 148 250 - -
Vivi1g06506 269 Gene3D - 145 263 - -
Vivi1g06506 269 FunFam Auxin-responsive protein 145 261 - -
Vivi1g06506 269 Pfam AUX/IAA family 35 260 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06506 Vivi-Chr1 148005662 148007456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06506 153 254 B3 DNA Binding Superfamily AT3G61830 33.333 3.09e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g06506 AUX_IAA 8.3e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06506 K14484 - gmx:100810013 338.191