Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06504 ATGGCAAACTCATTAGTAAGAAACCATGAATCAGAACTGAATCTCATGGCCACTGAGCTAAGATTAGGATTACCCGGTAGTGATGATCATGAGCTCGAAAAACTTCACAGAAACAACAAGAGATCTTCACCAGAATCAACTGAGGTTGAGTCCATCAACAAGACCAAAATGAATACTTCTTCTGATGATGATTCTAATATCACAAATGATGATCAAGATAATGCTCCACCTTCAAAGGCACAAGTTATTGGATGGCCACCAATTAGATCTTATAGGAAGAATAGCTTACAACAGAAGAAAGGTGAAGAAGTTGGGATGTACATGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAGATAGATCTCAAAGTTTACAAGAGCTACTCAGAACTTCTTGAAGTTTTGGGAAATATGTTCAAGTGTACATTTGGTGAATATTCTGAAAGAGAAGGGTATAATGGATCTGAATTTGTTCCAACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTCATGTCTTCTTGTAAGAGGTTGAGGATTATGAAAGGATCTGAAGCAAAGGGATTGGGTTGTTTTTGA 606 0.3746 MANSLVRNHESELNLMATELRLGLPGSDDHELEKLHRNNKRSSPESTEVESINKTKMNTSSDDDSNITNDDQDNAPPSKAQVIGWPPIRSYRKNSLQQKKGEEVGMYMKVSMAGAPYLRKIDLKVYKSYSELLEVLGNMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGLGCF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06504 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 196 IPR003311 GO:0005634|GO:0006355
Vivi1g06504 201 MobiDBLite consensus disorder prediction 45 76 - -
Vivi1g06504 201 Pfam AUX/IAA family 18 199 IPR033389 -
Vivi1g06504 201 MobiDBLite consensus disorder prediction 24 83 - -
Vivi1g06504 201 FunFam Auxin-responsive protein 100 201 - -
Vivi1g06504 201 ProSiteProfiles PB1 domain profile. 105 192 IPR000270 GO:0005515
Vivi1g06504 201 SUPERFAMILY CAD & PB1 domains 102 191 - -
Vivi1g06504 201 Gene3D - 99 201 - -
Vivi1g06504 201 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06504 Vivi-Chr1 147853726 147854960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06504 96 198 B3 DNA Binding Superfamily AT4G23980 35.922 1.58e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g06504 AUX_IAA 4.8e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06504 K14484 - gmx:100780752 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06504 1 147853726 147854960 Vivi1g06504 1 147853726 147854960 ECH
Vivi6g03915 6 135342043 135351920 Vivi1g06504 1 147853726 147854960 PCT