Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06502 ATGTCGAATCATCCCTCCGATACTCCCGCCGATGATTTCCTGGAGCAAATTCTCGGCCTCCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTTCATTAGCTGCTCCGATGATGCTGCAGCTTAACTCCGGCGATGGTGCCACTCATCTTGCTCCCGGAGCGGGATTTCATGCACCGGTATACCGTTTGGGTCTGAGCTTGGACCAGGGTACGGGAGGGTTCTTGAAGCCCGATGATGCTTCCGGGAGTGGCAAACGGTTCCGGGAAGATGTTGTTGATACCAGACCTAAGAATGCTTTTCATGGGCAACCCATGCCTACTACAGTTCCGACTGCTCCACATCCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCACACAGCATTGCTGAAAGGTTGCGTAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACAGATCGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCGGTGGCACCACTAGTAACTGACATCCCATTATCGTCGGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAGCCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGTTAAGCTCATGGAAGATAATGTTGGGGCTGCGATGCAGTTCCTTCAATCAAAAGCACTCTGCATCATGCCAATCTCACTGGCATCCGCAATATACCAATCACAACCATCAGACAACTCCAGTATAGTTAAGCCCGAAACTACTCCTCCATAG 855 0.5041 MSNHPSDTPADDFLEQILGLPNFTSADGTDASSLAAPMMLQLNSGDGATHLAPGAGFHAPVYRLGLSLDQGTGGFLKPDDASGSGKRFREDVVDTRPKNAFHGQPMPTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVVKLMEDNVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETTPP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06502 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Vivi1g06502 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Vivi1g06502 284 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Vivi1g06502 284 MobiDBLite consensus disorder prediction 97 133 - -
Vivi1g06502 284 SMART finulus 135 184 IPR011598 GO:0046983
Vivi1g06502 284 Gene3D - 124 186 IPR036638 GO:0046983
Vivi1g06502 284 FunFam Basic helix-loop-helix transcription factor 124 186 - -
Vivi1g06502 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06502 Vivi-Chr1 147803488 147806890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06502 57 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.872 1.29e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g06502 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06502 - - gmx:100793177 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06502 1 147803488 147806890 Vivi1g06502 1 147803488 147806890 ECH