Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06467 ATGTTCTCTCCACTTATGTCCAATTCCACTGTCTCTTCTGCTAGATTAAATCCAACTATTAACTCCTCACAACAACCTCAGAAAACCAAGAAAAAAAGAAACCTCCCTGGTAACCCAGATCCTGAAGCTGAAGTGATAGCTTTATCACCAAAGACACTACTAGCAACAAATAGGTTTGTATGTGAGATCTGCAACAAGGGTTTTCAGAGGGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAAGTGGTTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTACAAGAGCTCTTGGTGATCTTACAGGAATTAAGAAACATTACAGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTAACAGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCAATGTCAGCAAACCAATTATCCAACACTAACACAAACTCATTAGCTCAATCTCTCTTCCTCTTCCAAAACCAGCAAAACCACATCACATGGGACCCACCTCAACAAAACCCTAACCCTAGCAACCTCCACCACAACATCAAGCCTGAATCTCAAACCTTCCCTCACTCATTTCTTCATCACACCACCACCAAGACCAACATCATGTCATCATCACCCTTCCATGTCAGCACACAACAACCTTCCTCAAATGCTACCACGTCGCCACACCTTTCAGCAACTGCACTTCTCCAGACAGCAGCAAACGTTGGTGCCACCGCCATCACAGGTCACCACACATCTCAACTCAGCATGGGCGAGTTTACATCGGTGACTCATCTAGACTCGGTTGATCACTACATTAACAACTTGAGAGGCTTCAGAAAGAATGACGAAGGTCTCACGAGGGACTTTCTCGGCCTTACTAACACCGGCAGAGGACACGGTGGCTCCGTTGACGTAAAGGATATGCTAACATTCACAGGAGGTGTAGAGTATGAACAAAACATGATGTTCAAGTCACAACAAGGTTTTGGTTTCTTTGGAACAACGACAACAAGTGTTCCCGAATCATGGGGGAATTGTTAG 1209 0.4285 MFSPLMSNSTVSSARLNPTINSSQQPQKTKKKRNLPGNPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVVKKRAYVCPEPSCVHHNPTRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFNRKDSFITHRAFCDALAEESARMSMSANQLSNTNTNSLAQSLFLFQNQQNHITWDPPQQNPNPSNLHHNIKPESQTFPHSFLHHTTTKTNIMSSSPFHVSTQQPSSNATTSPHLSATALLQTAANVGATAITGHHTSQLSMGEFTSVTHLDSVDHYINNLRGFRKNDEGLTRDFLGLTNTGRGHGGSVDVKDMLTFTGGVEYEQNMMFKSQQGFGFFGTTTTSVPESWGNC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06467 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Vivi1g06467 402 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Vivi1g06467 402 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g06467 402 Gene3D Classic Zinc Finger 37 108 - -
Vivi1g06467 402 SMART c2h2final6 101 131 IPR013087 -
Vivi1g06467 402 SMART c2h2final6 59 81 IPR013087 -
Vivi1g06467 402 SMART c2h2final6 136 156 IPR013087 -
Vivi1g06467 402 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1g06467 402 Gene3D Classic Zinc Finger 114 194 - -
Vivi1g06467 402 FunFam protein indeterminate-domain 12-like 38 107 - -
Vivi1g06467 402 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Vivi1g06467 402 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vivi1g06467 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 357 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06467 Vivi-Chr1 146559225 146561912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06467 25 373 IDZ Gene Family AT4G02670 54.178 2.79e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g06467 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06467 K25870 - gmx:100780056 517.694