Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06465 ATGAATAATATGTTCTATGTGAAAGGAGAATACATGGAACCATTTTCATCATCATTTCAATTTGGATATGAATGCCAACCATTGATTCCACCACCCCAACCAATTGAAGGACTTCATGAAATTAGGCCTCAACCATTCCTCACCAAAACGTTTGATGTAGTGAGTGATCAAAGTACGAATCACGTGGTTTCGTGGAGCAGAGGTGGCGCCAGCTTTGTGATTTGGGATCCACAAGCTTTCTTCAATTATCTGCTTCCCAGATACTTCAAACATAATAATTTCTCAAGCTTTGTCAGACAACTAAACACTTACGGTTTTAGGAAAATAGATCCACATAAATGGGAGTTTGCAAATGGAGGATTCCTAAGAGGGCACAAACATTTGTTGAGGAACATAAGGAGAAAGAAGGGACCTTCTCGGCCTATTGACTGTTTTGGACTAGATGCGGAAATTGATCGTTTAAGGCAAGAGAAACAGGTATTGACGAAGGAGCTTGTGAGTCTTAGACAGAAGCAATATAAGGCCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGGTAGAAGTCTATCAGAAACAAATGATGTCATTCTTAGATAGAGCTGTGAAAAACCCTGCAATAATTCACCAACTACTCCAACAAAAAGAGAAGAAAAAAGAAACCATGGCCAAAAAGAGAAGGCTAATTGGAGGTGAAGAAAGACGAAGCAGTGTAAAAGTCGAGCCTTTAGAATTAGGAGATAATGAATTTTCTGTGTCGGAGTTGGAATTGCTAGCTAAGGAAATGCAGGTTTTTGGAAGGGGCCGGGAGATTAACAAGGACAATAAACCTGAGGCACTAGAATTACAAGAGAGGATGGAAGGAGCACTTGATGATGAAGGGTTCTGGGAAGAACTAATGTTAAATGTGGCATTTGAAGGTAGATTTGACATTCCAGCTGCTGAAGATAATGATGAGAATGAAGATGATTCATGTGAACTACTGAATCAAGAATTTAAGATTAACTCTTTTCCTCCATCTCACTAG 1032 0.3963 MNNMFYVKGEYMEPFSSSFQFGYECQPLIPPPQPIEGLHEIRPQPFLTKTFDVVSDQSTNHVVSWSRGGASFVIWDPQAFFNYLLPRYFKHNNFSSFVRQLNTYGFRKIDPHKWEFANGGFLRGHKHLLRNIRRKKGPSRPIDCFGLDAEIDRLRQEKQVLTKELVSLRQKQYKATLYLLEMEQRLQGVEVYQKQMMSFLDRAVKNPAIIHQLLQQKEKKKETMAKKRRLIGGEERRSSVKVEPLELGDNEFSVSELELLAKEMQVFGRGREINKDNKPEALELQERMEGALDDEGFWEELMLNVAFEGRFDIPAAEDNDENEDDSCELLNQEFKINSFPPSH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06465 343 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g06465 343 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g06465 343 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g06465 343 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g06465 343 Coils Coil 144 171 - -
Vivi1g06465 343 Coils Coil 210 230 - -
Vivi1g06465 343 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g06465 343 FunFam Heat shock transcription factor 1 39 136 - -
Vivi1g06465 343 SUPERFAMILY "Winged helix" DNA-binding domain 43 135 IPR036390 -
Vivi1g06465 343 Gene3D - 38 136 IPR036388 -
Vivi1g06465 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 237 IPR027725 -
Vivi1g06465 343 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06465 Vivi-Chr1 146460975 146463241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06465 32 309 HSF AT3G22830 45.994 1.67e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g06465 HSF_DNA-bind 9.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06465 K09419 - gmx:100794264 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03938 6 135959845 135962787 Vivi1g06465 1 146460975 146463241 PCT