Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06454 ATGGAACAGTATGAAGTTCTGGAACAGATTGGTAAGGGCTCTTTTGCTTCTGCTCTTCTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTCAAGAAGATCCGCCTTGCCCGCCAGACCGAAAGAGTCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCGAAAGTTCGTAATCCGTTCATTGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAATCATATTCTACACCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTAACAAGTGATGATCTTGCTTCTTCGATTGTGGGGACTCCAAGTTATATGTGCCCAGAGCTTCTCGCTGATATACCCTATGGATCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGTCCCCACTACCAACAGTTTATTCTGGTACTTTTCGAGGCATGGTGAAGAGTATGCTACGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAGCTACTAAATCATCCACATCTTCAACCTTATATACTTAAAGTTCATCTGAAACTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAATGGACCGACTCAAACCATGCAAGGAGAAGTCGATTTGTAGAACCAGAATCTGTTTCCACTCTCTCTGGCAGAGTTAAACGATTGTCGTTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTTTGTGTTCTACTCAAAGAGCTCAAGGATTCTCTACTTATTCAAAACATTATGAGCCATCCATTGGTTGTGTCCGTGAAGAACACAACGCTAACAAATCAAAAGACACCAAATTCTCAAATGTTGGTCGGATGGAAAGACTGAGATTAGCTAAGGAGTCTGCCACCCCGCGGCGACAGATTACCCCATCAAAGATAGCCCATACTAGTTCCAAGCGCGATTCGCTTCCTTCATCTTCTACTCCAGCTGGTAAATTTACACCACCATCTCGCAGAGCTTCCCTTCCATTGCCTTCAAGATCCTCAGCCACAACCACTCCTTACAGAGCCAATGTTGATCTTCTTCGAAATATGGACTCTCCTAATATCTCTGTGAATGCGCCACGAATTGATAAGATTGCTGAGTTCTCTTTGGCCCCTGGCGAGGATCATCCTCTCTTCCCTGTGCCTGCAACATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGGAGTGCTGCTGACTACACAATCACAAAAGACAAGTGTACAATCCAGATTGTGGACAAAGCCAATGTCCCTACCAGTGGTGCTCTAGTTCCATATGGCAGTGAATGCGCTGAACATGTCACAACTGCTGTTTCAATTAATTCATCGGCCGATTCTCGTCAACGCAAGTTTGACACCTCGTCTTACGAGCAACGAGCTGATGCACTAGAAGGGTTGCTCGAGTTCAGTGCCAGGCTTCTACAACAACAGAGATTTGAAGAGCTTGAGGTGTTGTTGAAGCCATTCGGTCCGGAGAAGGTTTCTCCAAGGGAAACAGCAATTTGGTTGACTAAGAGCTTTAAAGAAACTGTGGTCTAA 1827 0.4308 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTERVRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANCVHFSEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVSPLPTVYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVEPESVSTLSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTYSKHYEPSIGCVREEHNANKSKDTKFSNVGRMERLRLAKESATPRRQITPSKIAHTSSKRDSLPSSSTPAGKFTPPSRRASLPLPSRSSATTTPYRANVDLLRNMDSPNISVNAPRIDKIAEFSLAPGEDHPLFPVPATSSTSAQCSSSSPRSAADYTITKDKCTIQIVDKANVPTSGALVPYGSECAEHVTTAVSINSSADSRQRKFDTSSYEQRADALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06454 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06454 608 Gene3D Transferase(Phosphotransferase) domain 1 86 306 - -
Vivi1g06454 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06454 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vivi1g06454 608 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vivi1g06454 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 564 - -
Vivi1g06454 608 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
Vivi1g06454 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06454 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi1g06454 608 MobiDBLite consensus disorder prediction 376 431 - -
Vivi1g06454 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vivi1g06454 608 CDD STKc_Nek 3 258 - -
Vivi1g06454 608 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vivi1g06454 608 MobiDBLite consensus disorder prediction 383 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06454 Vivi-Chr1 146279932 146284041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06454 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 1.74e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi1g06454 Pkinase 6.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06454 K08857 - gmx:100810347 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06454 1 146279932 146284041 Vivi1g06454 1 146279932 146284041 ECH
Vivi6g03942 6 136119026 136124101 Vivi1g06454 1 146279932 146284041 PCT
Vivi1g05752 1 126676098 126681480 Vivi1g06454 1 146279932 146284041 PCT