Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06452 ATGAATAACGTTGATGAGAGCCATGTTGAACACCGTGTGGAAATTCCACCTCCACAGCCATTTTTGAAGTATATGAAATATGCAATGAAAGATATTTTCTTTCCAGATGATCCATTGAGAAGGTTTAAGAATCAACCAGCTTCAAGAAAGTTGGTGCTTGGTTTTCAATATTTATTTCCAATATTTGAATGGGCACCAAACTACACTTTTCAGTATTTGAAATCTGATGTCATAGCTGGGATCACTATTGCTAGTTTGGCTATTCCTCAAGGCATTAGCTATGCCAAACTTGCCAACCTCCCTCCAATTCTTGGATTATATTCCAGCTTCATACCACCGTTGATTTATGCTATGATGGGTAGTTCAAGAGATTTGGCAATTGGGACATGGGCAGCTGGGTCTCTTCTTTTGGGTTCCATGTTGGCCAGTGAAGTTGATCCAAACCAAAATCCAAGTCTTTATCTCCACCTTGCTTTCACGGCTACATTCTTTGCCGGGGTTATGCAAGTTTCATTAGGCCTCTTTAGGTTAGGGTTTATTGTGGATTTCCTATCCCATGCAGCCATAGTAGGGTTCATGGGAGGAGCAGCCACGGTGATTTGTCTGCAACAACTGAAATCAATGCTAGGTCTTGAACATTTCACCCATGGTGCTGATCTCATTTCAGTCATGCGTTCTGTTTTTACACAAGTTCATTTATGGAGGTGGGAAACTGCTGTTTTGGGATTAGTATTCCTTTTCTTTCTCCTTTTCACAAGATACTTGAGTAAAAAACAACCCAAAATCTTTTGGGTATCAGCAATGACGCCATTAACGTGTGTTATACTAGGAAGTTTACTAGTTTATTTCAGTGACGCCGAGAACCACGGCGTTCAAGTGATTGGAGAATTGAAGAAAGGATTAAACCCAGTCTCAGTCACAAAATTGGAATTTGTGTCTCCTTATATGACAACAGCTATCAAAACAGGACTTATAGTTGGCATTGTAGCTCTTGCGGAAGGAATATCTGCGGGAAGAAGCTTTGCAATGTCTAAAAATTACCATACTGATGTCAACAAAGAGATGATAGCTATTGGAACCATGAACGTTGTTGGTTCTTTCACCTCTTGCTACCACACAACAGGACCATTTTCGCGTTCGGCCGTGAACTATAACGCTGGATGCAAAACAGCAGCATCAAACCTTGTGATGGCAATTGCTATCATGTTGACACTCTTATTTTTGACACCTTTGTTCTTTTACACTCCTATGGCCGTACTAGCGGCCATAATTTTATCTTCAATGCCTGGACTTATCGATTATCAAGCAGCCATCCATCTGTGGAAGATTGATAAATTCGACTTTGTCGTCTGCATTGGCGCATATTTTGGTGTTGTCTTTGGCAGTGTTCAAATTGGCTTGGTCATAGCAGTTGTGATATCAGTACTTCGGTTACTTCTATTTATTGCAAGGCCGAAAACATCTATTTTAGGAAACATTCCAAATTCTGTTATATACAGAAACATTGAGCATTATCCCAATGCAAATCGTATTTCAGGAATTTTAATTCTAAAAATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGAATCTCAAGATGGATTGATGAAGAGGAAGACAGAATTAAAGCCATTGGGGAGACAAGTTTGAAATATATTATAATGGATATGAGTGCTGTTGGAAATATTGATACAAGTGGAATAAGTATGCTTGAAGAGATTAACAAGATTTTTAAAAGAAGAGAGCAGCAACTTGTTTTGGTCAACCCTGGAAGTGAAGTGATGAAGAAACTAAACAAATCTCACTTTCAGAAGGACATGGGGGAAAATTGGATCTATCTTACAGTAGAAGAGGCTGTTAAAGCATGTAACTTTGTGCTCCATGAATGCAACACAAATCCCAAAAGAGATGGGTTGGAGCATTGTTTGAGCTGTGATATGTAG 1956 0.3911 MNNVDESHVEHRVEIPPPQPFLKYMKYAMKDIFFPDDPLRRFKNQPASRKLVLGFQYLFPIFEWAPNYTFQYLKSDVIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAIGTWAAGSLLLGSMLASEVDPNQNPSLYLHLAFTATFFAGVMQVSLGLFRLGFIVDFLSHAAIVGFMGGAATVICLQQLKSMLGLEHFTHGADLISVMRSVFTQVHLWRWETAVLGLVFLFFLLFTRYLSKKQPKIFWVSAMTPLTCVILGSLLVYFSDAENHGVQVIGELKKGLNPVSVTKLEFVSPYMTTAIKTGLIVGIVALAEGISAGRSFAMSKNYHTDVNKEMIAIGTMNVVGSFTSCYHTTGPFSRSAVNYNAGCKTAASNLVMAIAIMLTLLFLTPLFFYTPMAVLAAIILSSMPGLIDYQAAIHLWKIDKFDFVVCIGAYFGVVFGSVQIGLVIAVVISVLRLLLFIARPKTSILGNIPNSVIYRNIEHYPNANRISGILILKIDAPIYFANASYLRERISRWIDEEEDRIKAIGETSLKYIIMDMSAVGNIDTSGISMLEEINKIFKRREQQLVLVNPGSEVMKKLNKSHFQKDMGENWIYLTVEEAVKACNFVLHECNTNPKRDGLEHCLSCDM 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06452 651 ProSitePatterns SLC26A transporters signature. 102 123 IPR018045 GO:0008271|GO:0008272
Vivi1g06452 651 PANTHER SULFATE TRANSPORTER 34 631 IPR001902 GO:0016020|GO:0055085
Vivi1g06452 651 CDD STAS_SulP_like_sulfate_transporter 505 620 - -
Vivi1g06452 651 FunFam Sulfate transporter 31 484 630 - -
Vivi1g06452 651 ProSiteProfiles STAS domain profile. 504 627 IPR002645 -
Vivi1g06452 651 Pfam Sulfate permease family 73 452 IPR011547 GO:0016020
Vivi1g06452 651 Gene3D STAS domain 484 629 IPR036513 -
Vivi1g06452 651 SUPERFAMILY SpoIIaa-like 507 627 IPR036513 -
Vivi1g06452 651 NCBIfam sulfate permease 60 623 IPR001902 GO:0016020|GO:0055085
Vivi1g06452 651 Pfam STAS domain 505 623 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06452 Vivi-Chr1 146095337 146102197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06452 11 637 Inorganic Solute Cotransporters AT4G02700 66.401 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06452 K17471 - gmx:100810196 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06452 1 146095337 146102197 Vivi1g06452 1 146095337 146102197 ECH
Vivi6g03944 6 136171279 136177482 Vivi1g06452 1 146095337 146102197 PCT