Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06418 ATGCCAAGCACAAGAAATATGAGAAATCTCAACAATTGTTTTTCAGATTCAACTCTATCAAAATCTCCACCTACAAGTCCCACTGCTATTACTACTACTACCAGTGCAACTTCCTCACATCAACATCATCACAAACCTTCTCCTTCTACATCTCCCACATCATTTATGATCAAGAACTTCAACTCTCTCTATGACCCTTCCTTAAACTCTGACCATACTTTATGTTCTTCTTCACTCTCTACCACTTTCACCATATCCACATCATTCAATCTTGATGTCGAACCCGAACCCGAGCTCGAACCAGTTGACTTTGCAGCTGCCTTCGCCTCTCAACGGTTCTTCTTCTCCTCTCCTGGAAGTTCGAATTCACTAGTTGAATACACAGATACAAATTGCAAGTCCAATAGTAGTGAGCGTGAGCGTGAGAAGAAGAAGAATAACAAAAAGGAAGAGAAAGAGGAGGTTTTGTTCAACGGAAGCGTGGCTGTTCCGACCTATTCGCCCGATCCTTATACGGATTTCAGGAGATCGATGCAAGAGATGGTGGAGGCGCGTCCGGAGTTGATGGATGTGAAGTCAAATTGGAACATCTTGCATGAATTGCTTCTTTGTTACCTTGCTCTCAACCCAAAGAACACTCACAAGTTCATTCTTGGTGCTTTCGCGGATCTTCTCGTTACCCTCATATCATTGTAA 696 0.4282 MPSTRNMRNLNNCFSDSTLSKSPPTSPTAITTTTSATSSHQHHHKPSPSTSPTSFMIKNFNSLYDPSLNSDHTLCSSSLSTTFTISTSFNLDVEPEPELEPVDFAAAFASQRFFFSSPGSSNSLVEYTDTNCKSNSSEREREKKKNNKKEEKEEVLFNGSVAVPTYSPDPYTDFRRSMQEMVEARPELMDVKSNWNILHELLLCYLALNPKNTHKFILGAFADLLVTLISL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06418 231 NCBIfam uncharacterized plant-specific domain TIGR01568 161 229 IPR006458 -
Vivi1g06418 231 MobiDBLite consensus disorder prediction 126 151 - -
Vivi1g06418 231 ProSiteProfiles OVATE domain profile. 163 227 IPR006458 -
Vivi1g06418 231 MobiDBLite consensus disorder prediction 1 54 - -
Vivi1g06418 231 MobiDBLite consensus disorder prediction 133 151 - -
Vivi1g06418 231 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 43 228 IPR038933 GO:0045892
Vivi1g06418 231 Coils Coil 134 154 - -
Vivi1g06418 231 Pfam Transcriptional repressor, ovate 167 228 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06418 Vivi-Chr1 144906761 144907742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vivi1g06418 Ovate 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06418 - - aprc:113871147 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06418 1 144906761 144907742 Vivi1g06418 1 144906761 144907742 ECH
Vivi6g03966 6 136514312 136515472 Vivi1g06418 1 144906761 144907742 PCT