Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06417 ATGAGGTTGAGATCTCGGACTCGGTCAGGGAAGGTTTTGGGTGAAGGGAAGGTTGTTCAGAAAGAAAGGGTTTCTGTGAAGAATGCTTGTGATAGTTTAGTTTCGGGTGATGAGGGTTTAGAGGCACCTTCGTCGTTGATTGAGAAGAAAGACGATGGAAATTTAGTTTCGGGTGATGAGCGTTTAGAGGCATCTACCTCTTTGGTTGAGAAGAAAGATGAGGATTTGGTTTCGGGGGACAACGGTTTAGAGGCACCTACCTCGTTGGTTGAAAAGAAAGATGAGGGTTCAGAGGCACCTACCTTGTTGGTTGAGAAGAAAGATGACGATTTAGTTTCAGGGGATGGGGGTTTAGAGGCACCTACCTCATTGGTTGAGAAAAAGGATGAGGATTTAGTTTCAGTGGATGAGGGTTTTGAGGCACCTACCTCGGTGATTGAGAAGAAAGACAAGGTTGAATGTGCTGGTGAAGTTGAAGGTGCTGGCGAAGTTGAATGTGTTGCGAAAACAAAATTTGACTTGGATTTAAATGCGAGTCCAAGTGAAAATATTGACTTAGCTGAGAATGAGAGCGGTTTGGATTTAAATGTGAGTGTGAGTGGAAATGTTGACTTAGCTGAGAATGGAAATAGTAGCCCTAGGAGTTGTTTGAAAGATGGTGATAGTTTAGAAGCTGAGGTTGATAGGGAGGAGAATGAAGGGTTGAGTCGGGCTCGAGTATTGCGGTCAAGATCAAAGAGGGGAGACGATAAAAAACCTGATAATGGAGGGAATGACGTTGCTGAGAATAATGGAGAACCTGGTGGGTTTGATGAGGTTAGAGAAGCTGATGGAGTTTTTACTGATGGTAACGAGAATGAAGGAGTTAAGGTGAAAATGGGAGGGAAGGGCAAGAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCGAAAACGGAGATAAAAGCGAAAGATGAATTAGTTGATCAGCCACTGAGTAAGGTTGGGAGGCGTCCAAAAACCGAGATAAAAGAGAGAGGTGAATTAGTTGATCAGCCACCACGTAGGGTTGGGAGGCCTCCAAAAACAGAGATAAAAGAGAAAGATGAATTAGTTGATCAGCCAGCGCGTAGGCTTGGGAGGCCTCCGAAAACAGAGATAAAAGAGAAAGATGAATTAGTTGATCAGCCAGCGCGTAGGCTTGGGAGGCCTCCGAAAACAGAGATAAAAGAGAAAGGTCTATTAGTTGATCAGCCACTGAGCAAGCTTGGGAGGCCTCTCAAAGAAGTTATAAAAGAGGATGATCAGTTAGTTCAGCCACCTCGTAAGCGTGGGAGACCTCCCAAGACCGACCAACAAAAGTATCCCATGACCGTGTCACATAATAGTAAAGGAAAGGCGAGGCATGAAAATGGGAAAAAAGTTTCCAGTAAAAAGTTTAAAAAGAAGAGAACATCAAATACTGTGAGTGAACCTGCTGCTAATCGAATTAAATTACGTGAACAAAAGCAATTGGTGAGTAATCAAATGAAGAGGACATCAAGTACTGTGAGTGAACCTGCTACTAATCGAATTAAATTACGTGAACAAAAGCAATTGGTTAGTAATCAAATAATGGGATGTCTCTCAGATGCAGGATGGACTGTTGACCATAGACCTAGAAATGGAAGAAATTATATTGATGCAGTATATGTTGCTCTGGATGGAAAAACACATTGGTCCATAACCAAGGCGTACAAGAGGCTTAAAGAGCATTGTGAAGCGGGGAATGGTGAAGGTATGTCGTACAGACCAGGATTCAAATTTACACCAATACCAGAGGAAGATTTCAATTTACTGACTAGAATTGTTACTAAGAAAAGATGTTCAGTTAAATGTGTGCCATTTGAAGGAAAAGTTGGAAAAAATGTTGGTGGGGTCAATCGAAAAAAGAAAAAAATAAAACCAGGTTCTGGTGCTGGCAAGGGTAAGTCAGTGAAAGGGAAAATGAAAAGGAAACGATCACTTGCCGAGGACGGCGATACAGATCGTAAGCGGCACAAAACACAGAACAAGACGCGAGGTGCTTTGTTGGTTCGGGATGCTACAGAAGAGGTAGATTCAGTAATTAACGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCCTGGATGATTGATTTGGGCACAATCCTTCAAAATGGGAAGGTCCATTGTATGCAAGACAAGTTGGAAATTGCTCCACTGGAAGGTAGTATCACAGGAGATGGTATTCACTGTGGCTGCTGTAATTCAATCATAACAGTTTCTGACTTTGGAGTTCATGCAAGAAGCAAACAATCTGATCCTCTTAAAAGTATATATATGGAGGATGGAACTTCACTCCTACAGTGCCTGCTAGATTCATGGAATAAACAAGATGAATCTGAACGTAAAAGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCTAACGATGATACATGTGGTATCTGCGGAGATGGTGGAGACCTGATGTGCTGTGATGGTTGCCCATCAACGTTCCATAAAAGCTGCTTGGATATAAAAAAGTTTCCATCTGGTGACTGGAACTGCATTTACTGTTGTTGCAAATTTTGTGGGTTGGTTGGTGGATGTTCAAACCAAAGTGTTGTCAATGACGAGTTTACTATGCCTGCATTGCTCACATGCCATTCATGTGAGGAAAAATTTCACAAATCCTGTATTGAGGCAAATGGTGGTAAGACTGATGATTCCGGGAATGCATTATTTTGCGGAAACAAATGTCAAGAGTTATCCGAGGGACTTGAAAGGCTTCTTGGGGTTAAACATGAAATCGAAGATGGGTTTTCTTGGTCTTTTATTTGGCGATCAGATGTTGGCTTTGATGCTTCTCTGACAAAACCTCAGCTGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATTTATTGATCATAGAAGCGGGACCAATCTGATCCGCAGTATTGTATACAATTGTGGGTCAAACTTCAAACGCCTGAACTATAGTGGATTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATATGTGTTGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTCATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATGGGCGCTCAATTCTTTACATGTTGAGGTATTAGTCATACCAGCTATATCAGAACTCAAAGAAACCTGGACCTCTGTTTTTGGGTTTGAGCCACTTGATCAAACAAGGAAGCAAATAACAAAGAACATGAATCTGTTGGTGTTCCCTCACGTAGATATGCTACAGAAGAAGATATCAAAGCATGAATTTACTAATGAAAATTTGATTCCTACTGAAGTTTCCAATCATAAGAAGAATCATACTGCATACGAGGCAGCAAATCAGGATGGGGAAGACTCAACAGGATCTGATTGTTGCAAGAAAATTGATAACTCATTGAATAACACACCTGACATTACTAGCGACAACATACAGAACAGTAAATCTACAAAAGATATCACATGTCAAGCTGTTCATGAACAATTGGTTGTGGACAGCAAAAGCACTGAGAATGCCGGTGACCATGTGGCTGATTCTTGTTGCCAAGTTGGAGACTACGATGGTGCACTGTTGGAGGTTACTGAAAATTGTTCAAACAAGGTCAAAGTAACAACTGAGGTTGGTTTAAATAACATCAGTGCTGAAAAATCTGTACTCTCTGGGGCAGAAAATATTCCTATTGACTCACAAGTTATGTTTAGGACAAGGGAATCAAAATATTCTGCTGACAGTAACCATGATTCACACAAGATTTCTGACAGCTGTGAACTGAGGGTTAAGACCGACTGTGCTCAACCAGATGGTATTGGATCAGAAGTACATACTCAATTTGACAATGGTTGTAGCACTCATTCTGTACCTGATGGTGATATTGCCTCTGGTGTAGCAGGTCTCCCGACCAACATCTTTACGAACACTGAATCACAAAAATTCACCCAAGATTTGCCTGTTAGTTGTGAAAACAATTCAAGTGTTGTTAGTGAGCCAAATGCTGATGAGGCAGAACTATGTTATTCCAAAACCATTGATCTCCAAACAAACAAAAATCCTAGAGATTGTCAATCTATACTAGTATCTTCTGGTATTTGTGAGAAAATTGCGAATGGTGTCAATGAGACGAATAAAGCTTCCAGTGAAGCTGATACCAGTTTTCTTCCTATTGAAGTAATTCTTGATGATAAACCTGGTTCTCATTCTATATCCAAGGGTCGCAGTGTCTCCGACGAAGCAGGTCTCACAACCAACATTTTGATGCATCTTGAATCACAGAGTATTACCAAACATTTTCCTGTTAATTGTGAAAACAATTCTAGTGGTCATGGTGCGCCAAATGCTGATGAATCCGAACTATGTCATTCCAAAACAATTGATCTCCAGACAAACATAATTCCTGAAGATTGCCAATTCATACTAGAATCTTCAGGTGTTTGTGAGAAAATTGCAGATGGTGTCAGTGAGAAGAATAAAGCGCCCAGTGCAGCTGATGCCAATGCTCTTCCAATTGATATTGAAGTAATTCCCAATAACAAGCCTGAGATAAAGGAGTCTTCAGAGCCAGCAGAGCTCGATTTGCAGGTTGATGAAACTGAACAGAGTGAAACTAAATCTGCTTCAGGTGCGGCTCTGCATTGTGCATCTGCTGGCAGTAATTCATGTGGTAGTGCTGACGGCTTAGTTCTGTCAAACAAGGCAGTTGAGTAG 4791 0.4143 MRLRSRTRSGKVLGEGKVVQKERVSVKNACDSLVSGDEGLEAPSSLIEKKDDGNLVSGDERLEASTSLVEKKDEDLVSGDNGLEAPTSLVEKKDEGSEAPTLLVEKKDDDLVSGDGGLEAPTSLVEKKDEDLVSVDEGFEAPTSVIEKKDKVECAGEVEGAGEVECVAKTKFDLDLNASPSENIDLAENESGLDLNVSVSGNVDLAENGNSSPRSCLKDGDSLEAEVDREENEGLSRARVLRSRSKRGDDKKPDNGGNDVAENNGEPGGFDEVREADGVFTDGNENEGVKVKMGGKGKRKLKRKRGRPPKTEIKAKDELVDQPLSKVGRRPKTEIKERGELVDQPPRRVGRPPKTEIKEKDELVDQPARRLGRPPKTEIKEKDELVDQPARRLGRPPKTEIKEKGLLVDQPLSKLGRPLKEVIKEDDQLVQPPRKRGRPPKTDQQKYPMTVSHNSKGKARHENGKKVSSKKFKKKRTSNTVSEPAANRIKLREQKQLVSNQMKRTSSTVSEPATNRIKLREQKQLVSNQIMGCLSDAGWTVDHRPRNGRNYIDAVYVALDGKTHWSITKAYKRLKEHCEAGNGEGMSYRPGFKFTPIPEEDFNLLTRIVTKKRCSVKCVPFEGKVGKNVGGVNRKKKKIKPGSGAGKGKSVKGKMKRKRSLAEDGDTDRKRHKTQNKTRGALLVRDATEEVDSVINGYVPYSGKRTVLAWMIDLGTILQNGKVHCMQDKLEIAPLEGSITGDGIHCGCCNSIITVSDFGVHARSKQSDPLKSIYMEDGTSLLQCLLDSWNKQDESERKSFHFVDVAGEDPNDDTCGICGDGGDLMCCDGCPSTFHKSCLDIKKFPSGDWNCIYCCCKFCGLVGGCSNQSVVNDEFTMPALLTCHSCEEKFHKSCIEANGGKTDDSGNALFCGNKCQELSEGLERLLGVKHEIEDGFSWSFIWRSDVGFDASLTKPQLVECNSKLAVALSIMNECFMPFIDHRSGTNLIRSIVYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALNSLHVEVLVIPAISELKETWTSVFGFEPLDQTRKQITKNMNLLVFPHVDMLQKKISKHEFTNENLIPTEVSNHKKNHTAYEAANQDGEDSTGSDCCKKIDNSLNNTPDITSDNIQNSKSTKDITCQAVHEQLVVDSKSTENAGDHVADSCCQVGDYDGALLEVTENCSNKVKVTTEVGLNNISAEKSVLSGAENIPIDSQVMFRTRESKYSADSNHDSHKISDSCELRVKTDCAQPDGIGSEVHTQFDNGCSTHSVPDGDIASGVAGLPTNIFTNTESQKFTQDLPVSCENNSSVVSEPNADEAELCYSKTIDLQTNKNPRDCQSILVSSGICEKIANGVNETNKASSEADTSFLPIEVILDDKPGSHSISKGRSVSDEAGLTTNILMHLESQSITKHFPVNCENNSSGHGAPNADESELCHSKTIDLQTNIIPEDCQFILESSGVCEKIADGVSEKNKAPSAADANALPIDIEVIPNNKPEIKESSEPAELDLQVDETEQSETKSASGAALHCASAGSNSCGSADGLVLSNKAVE 1596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 310 407 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 34 122 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 1542 1586 - -
Vivi1g06417 1596 Pfam AT hook motif 346 355 IPR017956 GO:0003677
Vivi1g06417 1596 Pfam AT hook motif 391 399 IPR017956 GO:0003677
Vivi1g06417 1596 Pfam AT hook motif 302 311 IPR017956 GO:0003677
Vivi1g06417 1596 Pfam AT hook motif 369 377 IPR017956 GO:0003677
Vivi1g06417 1596 Pfam AT hook motif 433 443 IPR017956 GO:0003677
Vivi1g06417 1596 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 955 1115 IPR000182 GO:0016747
Vivi1g06417 1596 ProSiteProfiles Zinc finger PHD-type profile. 812 857 IPR019787 -
Vivi1g06417 1596 SUPERFAMILY FYVE/PHD zinc finger 803 856 IPR011011 -
Vivi1g06417 1596 CDD PHD1_AIRE 815 854 - -
Vivi1g06417 1596 Pfam Tify domain binding domain 737 786 IPR032308 -
Vivi1g06417 1596 PANTHER PHD FINGER PROTEIN 12 471 1265 IPR042163 GO:0003714|GO:0045892
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 87 114 - -
Vivi1g06417 1596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 877 IPR013083 -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 418 442 - -
Vivi1g06417 1596 SMART PHD_3 814 855 IPR001965 -
Vivi1g06417 1596 SMART PHD_3 856 916 IPR001965 -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 1561 1586 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 202 488 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 219 257 - -
Vivi1g06417 1596 SMART AT_hook_2 346 358 IPR017956 GO:0003677
Vivi1g06417 1596 SMART AT_hook_2 302 314 IPR017956 GO:0003677
Vivi1g06417 1596 SMART AT_hook_2 433 445 IPR017956 GO:0003677
Vivi1g06417 1596 SMART AT_hook_2 368 380 IPR017956 GO:0003677
Vivi1g06417 1596 SMART AT_hook_2 390 402 IPR017956 GO:0003677
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 202 217 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 43 79 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 632 677 - -
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 657 673 - -
Vivi1g06417 1596 PRINTS AT-hook-like domain signature 302 312 IPR017956 GO:0003677
Vivi1g06417 1596 PRINTS AT-hook-like domain signature 431 441 IPR017956 GO:0003677
Vivi1g06417 1596 PRINTS AT-hook-like domain signature 344 355 IPR017956 GO:0003677
Vivi1g06417 1596 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06417 Vivi-Chr1 144882180 144892369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06417 344 1122 PHD Transcription Factor Family AT5G36670 41.907 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06417 - - vvo:131644413 3052.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06417 1 144882180 144892369 Vivi1g06417 1 144882180 144892369 ECH