Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06400 ATGGCTGCTCCAACTCCATCTCTAGAAGGTGGTTGTAATAAGCTTCAAAACATGTTACAAGCCGCAGTGCAATCGGTTCAATGGACTTATAGCCTTTTCTGGCAAATTTGCCCACAACAATTGATACTGGTTTGGGGCGATGGATATTACAATGGAGCAATCAAGACAAGAAAAACAGTGCAACCGATGGAGGTTAGTGCGCAAGAAGCCTCACTACAAAGAAGCCAGCAACTAAGAGAACTCTACGAATCCTTATCGGCCGGAGAGACGAATCCACCAACGCGACGGCCGTGTGCTTCTTTGTCGCCCGAAGACTTAACAGAATCTGAATGGTTTTATTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATATGCTAGAAGGCAACATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTTTAGCTAAGAGTGCTCATATACAGACTGTGGTGTGCATTCCTGTCTTGGACGGTGTCGTTGAGATTGGCACAACTGATAAGGTTCAAGAAGATCTTAATTTCATCAAACATGTGAAGAGTTTCTTTTTAGACCACCACTCTTTCCCATCAAAGCCAGCACTCTCAGAACACTCAACCTCCAATCCAACTTATTCGACCGATCACATTCCCGCCATCATGTACACAGTGGCAGACCCACCCTCCACAGCAAATCCCAATCAAGACGACATGGATGAAGACGAGGATGAAGATGAAGAAGACGACGAAATTGAATCAGGATCGGAAGATGAAGCGGATCAAGGCCATAACCAACACGCAACCTCTATAACAGAGGTTGCGGAGCCGAGCGAGCTCATGCAAATTGAAATGCCCGATGATATTCGGATCGGGTCACCAAACGACGGGTCAAATAATTTGGACTCGGATTTTCATTTGTTGGCAGTGAGTAACCAAGGAAACCTATCTAGACAAGTTGACTCGTATAAAACCGAGAGATGGGGTTCAATCGAAGAACATGCAGACGATTCACTACAAGTTCAATTATCATCTTCAGTGCTTCATCATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACCGTAACCACCATTCTCCAAAACCAACGGAACGATTCACCTTCCATCAACTTCATCAACTACTCCACCCAATCCTCTTTCACCAACTGGACCAACCACCACTTCCACGCGCCACCGCCTTCAGACACCACCACCACCCCCCAATGGCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAGCCACGACGAAACCTCTCCGCAAACCCGCGACACCGCCGGAGCCAACGCCGATCCCTCCGCCAGACTACGCGGCAAGGGGACCGGAACTCCACAAGACGAACTCAGCGCGAACCACGTCCTCGCTGAGCGACGGAGGAGAGAGAAACTCAACGAGAGGTTCATAATTCTAAGATCATTGGTTCCGTTTGTGACGAAAATGGATAAAGCTTCTATCTTAGGCGACACGATAGAGTATCTGAAACAGCTTCGGAGAAAGATTCAAGATCTCGAGACACGTAACCGTCAGATGGAGTCCGAGAAAAACGGAGTAACGGTTTTGGTGGGTCCCACTGAGAAGAAAAAGGTGAGGATTGTGGAAGGGAGTAATGGTGGGGCCGTTAGAGCGAAAGCGGTTGAGGTTGTTGCGTCGGTTCAGGTTTCGATTATAGAGAGTGATGCTTTGTTGGAGATTGAATGTTTGCAGAGAGAAGGTTTGTTGTTGGATGTTATGATGATGTTGAGAGAGCTGAGAATTGAGGTCATTGGAGTTCAATCTTCGCTTAACAATGGCGTTTTTGTGGCCGAATTAAGGGCTAAGGTTAAGGAGAATGGTAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCGCTTAACCAAATTATACCTCATAATATTTAG 1965 0.4641 MAAPTPSLEGGCNKLQNMLQAAVQSVQWTYSLFWQICPQQLILVWGDGYYNGAIKTRKTVQPMEVSAQEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPVLDGVVEIGTTDKVQEDLNFIKHVKSFFLDHHSFPSKPALSEHSTSNPTYSTDHIPAIMYTVADPPSTANPNQDDMDEDEDEDEEDDEIESGSEDEADQGHNQHATSITEVAEPSELMQIEMPDDIRIGSPNDGSNNLDSDFHLLAVSNQGNLSRQVDSYKTERWGSIEEHADDSLQVQLSSSVLHHPLEDLTQEDTHYSQTVTTILQNQRNDSPSINFINYSTQSSFTNWTNHHFHAPPPSDTTTTPQWLLKYILFTVPYLHTKSHDETSPQTRDTAGANADPSARLRGKGTGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQMESEKNGVTVLVGPTEKKKVRIVEGSNGGAVRAKAVEVVASVQVSIIESDALLEIECLQREGLLLDVMMMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGNGKKVSIVEVKRALNQIIPHNI 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06400 654 SMART finulus 474 523 IPR011598 GO:0046983
Vivi1g06400 654 Pfam Helix-loop-helix DNA-binding domain 471 518 IPR011598 GO:0046983
Vivi1g06400 654 MobiDBLite consensus disorder prediction 242 263 - -
Vivi1g06400 654 MobiDBLite consensus disorder prediction 434 468 - -
Vivi1g06400 654 MobiDBLite consensus disorder prediction 231 285 - -
Vivi1g06400 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 197 IPR025610 -
Vivi1g06400 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Vivi1g06400 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 470 536 IPR036638 GO:0046983
Vivi1g06400 654 Gene3D - 469 539 IPR036638 GO:0046983
Vivi1g06400 654 PANTHER TRANSCRIPTION FACTOR TT8 13 652 - -
Vivi1g06400 654 Coils Coil 507 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06400 Vivi-Chr1 144589914 144599723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06400 296 653 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.915 7.18e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g06400 bHLH-MYC_N 1.7e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06400 - - cam:101506726 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06400 1 144589914 144599723 Vivi1g06400 1 144589914 144599723 ECH