Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06386 ATGGTTTATGATACTGCTAAAGCCTTGGGAAGTGTCTCAGGAGGCTACAATTTAAGTTGGGAGTTCCATGTAAGCTCAAACTCTCTCTACTTTGTTCGTCTGCATTTCTGTGACATAATTAGCAACTCTACTAACTCTTTGGTTATGGATCTGTTTGTGAATGGATACATTGCCTTACAAAGTCTTGACCTCGTAAGTGTTTCTGGTGACCTTGCCGAGCCGTATTACAAGGACAATGTGTTCAATGCCATAGCCGATACGCTCACTGTAAGTGTTGCTCCTGCTACAATATCTAGTATTCCAAATGCAACCATGAATGGGATAGAGATAATGAAGTTCGTTGACAAATTTGACCATGTTGTAGCAAAATCTTCAAAAACAAGCAAGAAATTCAAATTGAAATTAGGCACTATAATTGGACCTAGTGTCTTTGTTTTAACATTTCTAGCATTTCTTGGACTAACGTTTTGTTACCTAAAATCGTGGTGGTTGAAGAAAATATCGCCAAATGCTTACAAACATCAAAGACATTTTACTTTGCATGAGATCCAACAAGCAACGAACTATTTTGATGCTGAGCTACTTATTGGACAAGGAGGATTTGGTAAGGTATATAAAGGAACATTTGAAAATGGGAAAATAGTAGCCATCAAAGTAGCAAATGCTGAATCTAGACAAGGTCTCAGTGAATTCAATAATGAGATTGAGTTGTTGTCCGGTCTTGGTCATCAAAACCTTGTCTCTCTTGTAGGTTGTTGTAATGAAGACTCAGAACTGATTCTGGTGTACAATTACATGGCAAATGGATCTCTCAGCAGTCATCTATATGGGAGTGACTTTGTTCCTCTTTCTTGGAAGCAACGCCTTGGGATATGTTTAGGGGCTGCAAAGGGTCTTTTTTATCTTCACACTGGAGCTAAACAGAGCATAATTCACCGTGATGTGAAGACAATAAACATTCTGTTGGATGAAAATCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAAAAGGGCCCTCTTCTTGATAAGAGCCATGTTACAACCAATGTGAAGGGTAGTTTTGGCTATGTTGATCCAGAATATTTTAGGACTAAGTTTCTCACTAAGAAATCAGATGTTTATTCATTTGGGGTGGTGTTGATTGAAGTTATATGTGGGAAGCCTGCTTTAGATGATGCCCTTCCAACGCAACAGATGAATTTGGCATTATGGGCACTAAGCAGCCATAAAAAAGGCACTTTCAATGAAATGATTGACCCAAGTTTGATTGGAAAAGTGAATATGGATTCTCTAAACAAGGTTTTAGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGTGAACAGACCACCCATGGGGTACGTACTATGTCAACTAGAAGAGGCTCTCCATCTTGAGTTGGCATCAAATGTTTTGAATGACAATGTGGTTTCTACGAATCATGCCAATACAAGCTATGGATTTACTGATGATATAGGAGATGTTGTTTGA 1494 0.3889 MVYDTAKALGSVSGGYNLSWEFHVSSNSLYFVRLHFCDIISNSTNSLVMDLFVNGYIALQSLDLVSVSGDLAEPYYKDNVFNAIADTLTVSVAPATISSIPNATMNGIEIMKFVDKFDHVVAKSSKTSKKFKLKLGTIIGPSVFVLTFLAFLGLTFCYLKSWWLKKISPNAYKHQRHFTLHEIQQATNYFDAELLIGQGGFGKVYKGTFENGKIVAIKVANAESRQGLSEFNNEIELLSGLGHQNLVSLVGCCNEDSELILVYNYMANGSLSSHLYGSDFVPLSWKQRLGICLGAAKGLFYLHTGAKQSIIHRDVKTINILLDENLVPKVADFGISKKGPLLDKSHVTTNVKGSFGYVDPEYFRTKFLTKKSDVYSFGVVLIEVICGKPALDDALPTQQMNLALWALSSHKKGTFNEMIDPSLIGKVNMDSLNKVLELAWKCLEERRVNRPPMGYVLCQLEEALHLELASNVLNDNVVSTNHANTSYGFTDDIGDVV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06386 497 Gene3D - 1 114 - -
Vivi1g06386 497 ProSiteProfiles Protein kinase domain profile. 190 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06386 497 SMART serkin_6 190 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06386 497 Pfam Malectin-like domain 2 112 IPR024788 -
Vivi1g06386 497 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Vivi1g06386 497 SUPERFAMILY Protein kinase-like (PK-like) 171 460 IPR011009 -
Vivi1g06386 497 Gene3D Phosphorylase Kinase; domain 1 161 265 - -
Vivi1g06386 497 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 462 - -
Vivi1g06386 497 Gene3D Transferase(Phosphotransferase) domain 1 266 483 - -
Vivi1g06386 497 Pfam Protein tyrosine and serine/threonine kinase 195 456 IPR001245 GO:0004672|GO:0006468
Vivi1g06386 497 CDD STKc_IRAK 196 462 - -
Vivi1g06386 497 FunFam Receptor-like protein kinase FERONIA 266 482 - -
Vivi1g06386 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vivi1g06386 497 FunFam receptor-like protein kinase FERONIA 160 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06386 Vivi-Chr1 144206512 144208599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06386 2 469 Receptor kinase-like Gene Family AT2G21480 44.882 3.25e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vivi1g06386 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06386 - - tpra:123882962 752.666