Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06379 ATGGAAGGAGAAAGTAACAACAAAGACAACAGTTCAGAGCCAGTCTCATATGAAAATGAAGAAGAAACGAGCAACCATGAAGTCCCTGAGGATCATCACATTCAAAATCAACAATCTGAAACAAGTGTGGCACAGTGGAATTGTGTGCCAAAACTACCTTATAGTAACTATGTTGAATATCTCTCTGAATCTTCAACTTATCTTCCAACAGCCGAGTATAACTTGGTTGGGAACAATTATCAAACACTTGGTAGCACAAACAGCTTCAACGATCAAGGAAAAGCTTTTGGTTTTGGTTTTAAACCGATTGGTTCTTCAAGTAATGACTATGGTATTATGAAGCATGCTGGGTTTTGGAGAAATAATGGAGAAGAAGAAGAAGAAGCAATTACAGCTAAAACTGGAAGTACTCAAAACCTTCTCAATGCTGAGTGTGATGCAACATGGCCAAGTGATTCAGTTGGAGATAAGCATAATGCTTCAAGATTTGATTCAATGGGAATGGTTGGTGATGCTTCACCTTTTTTACTTCCAATTCCAAAATCAGGAAGCAGCTCCACAAGACAGAAAAGTGAGAAATCGCGTTGTACTGACCGTCATCGCAGACAACGTATTGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCAAGAAGGGGGTTGTCAAGCTCAAGCTTACATACTGGACGACATCATCGACTATGTTAAATACTTGCAGAATCAACTAAAGGAACTAAGTGGAAGTAAATTGCAAAGTGACTCAAATGCTATACCTCTAGTTTATCATGAGGGTTATGGGCATTATATAAAGGATCAAATGCTGAACGAGCCTCTTGAAGAGATAATGGGGAAACTAGTTGAAGAACAATCAGCAGCAACAAGTCAGCTACTTGAGAGCAAAGGTCTTATTCTACTGCCTATTGCTCTGCTTGAAGAATTGAACCAAGCTATGCAATTGTTGAACCAAGCTAGCTAG 981 0.3914 MEGESNNKDNSSEPVSYENEEETSNHEVPEDHHIQNQQSETSVAQWNCVPKLPYSNYVEYLSESSTYLPTAEYNLVGNNYQTLGSTNSFNDQGKAFGFGFKPIGSSSNDYGIMKHAGFWRNNGEEEEEAITAKTGSTQNLLNAECDATWPSDSVGDKHNASRFDSMGMVGDASPFLLPIPKSGSSSTRQKSEKSRCTDRHRRQRIADNLKALHELLPNQEGGCQAQAYILDDIIDYVKYLQNQLKELSGSKLQSDSNAIPLVYHEGYGHYIKDQMLNEPLEEIMGKLVEEQSAATSQLLESKGLILLPIALLEELNQAMQLLNQAS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06379 326 Pfam Helix-loop-helix DNA-binding domain 195 241 IPR011598 GO:0046983
Vivi1g06379 326 Gene3D - 182 255 IPR036638 GO:0046983
Vivi1g06379 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 253 IPR036638 GO:0046983
Vivi1g06379 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 311 - -
Vivi1g06379 326 MobiDBLite consensus disorder prediction 19 34 - -
Vivi1g06379 326 MobiDBLite consensus disorder prediction 179 199 - -
Vivi1g06379 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 240 IPR011598 GO:0046983
Vivi1g06379 326 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g06379 326 CDD bHLH_AtbHLH_like 197 248 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06379 Vivi-Chr1 144128386 144130536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06379 185 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 34.641 8.50e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g06379 HLH 8.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06379 - - psat:127092327 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06379 1 144128386 144130536 Vivi1g06379 1 144128386 144130536 ECH