Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06375 ATGAGCCTCTCAATGATCATGAGCAGATTAATCACACAACCTTTAATAAGCAATGTTCCATGCAATGGCAAAAAACTCAACATTCGACAAATTCAAAAAGAGAATGTAATTTTAGTGATGGGAGCAACCGCCACAGGAAAATCCAAGCTATCAATTGACTTAGCAAACTATTTTCCTTCCGAAATAATCAACTCCGACAAAATACAAATCTACGAAGGCCTCGACATCGTAACGAACAAAATAACAAAAGAAGAACAAAAAGGAGTACCTCACCATTTACTAGGAACACATAACCCCAACATAGAGTTCACATCCAATGATTTTCGCGAAAAATCAACCTCGGCCATTGACTCAATCACCGGCCGAGGAAATCATCCCATCATCGTCGGAGGCTCGAACTCCTACCTCGAGGCCTTAATCGACGATGATGACTATAACTTTCGATCCAAATACAACTTTTGTTGTCTCTGGGTCGATGTTTCAATGCCTATTCTCCGCGCGTACATAGAACAACGCGTGGATCAAATGTTTAACAACGGAATGATCAACGAACTCCGCCCGTTTTATAATCCGACCGGGGATTATTCAAAAGGAATACGAAAAGCCATCGGTGTACCCGAATTCGACGAATATTTCCGAATGGAGAGTTTCGTGGACGAAAAGACGAGGCAAAAACTACTCGAAAAAGCCGTTAGTGACATGAAGATAAATACATGGAAACTAGCTAGGAAACAGCGTGGGAAGATTGATTTTCTGAAGAATGTTAAGAGATGGGAGATTCATCGGTTGGATGCTACACCTGTTTTTAGGAAGCGTGGAGAAGAAGCTAATGAGACATGGAAGAAGATTGTTGCAGAGCCTAGTGCTATGATTGTGGCAAACTTTTTGTATAACTCTGCTAATGTTGTGAATGCTTCTTCTTCAAGGAATCTTAGAGTGCCAAATTCTCAGAGTGATCTTATGGCTGCTGCTACATGTTAG 981 0.4108 MSLSMIMSRLITQPLISNVPCNGKKLNIRQIQKENVILVMGATATGKSKLSIDLANYFPSEIINSDKIQIYEGLDIVTNKITKEEQKGVPHHLLGTHNPNIEFTSNDFREKSTSAIDSITGRGNHPIIVGGSNSYLEALIDDDDYNFRSKYNFCCLWVDVSMPILRAYIEQRVDQMFNNGMINELRPFYNPTGDYSKGIRKAIGVPEFDEYFRMESFVDEKTRQKLLEKAVSDMKINTWKLARKQRGKIDFLKNVKRWEIHRLDATPVFRKRGEEANETWKKIVAEPSAMIVANFLYNSANVVNASSSRNLRVPNSQSDLMAAATC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06375 326 Pfam IPP transferase 148 246 - -
Vivi1g06375 326 Pfam IPP transferase 69 142 - -
Vivi1g06375 326 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 295 IPR039657 -
Vivi1g06375 326 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Vivi1g06375 326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 145 IPR027417 -
Vivi1g06375 326 Gene3D - 33 296 IPR027417 -
Vivi1g06375 326 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06375 Vivi-Chr1 143981171 143982473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06375 149 296 C2H2 Transcription Factor Family AT2G27760 28.571 8.07e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06375 K10760 - gmx:100803964 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06375 1 143981171 143982473 Vivi1g06375 1 143981171 143982473 ECH