Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06344 ATGGAAGGAGAAAGTAACAACAAAGACAACAGTTCAGAGCCAATCTCATATGAAAATGAACAAGAAACGAGCAACCATGAAGTCTCTGAGGATCATCAAATTCAAAATCAACAATCTGAAACAAGTGTGGCTCAGTGGAATTGTGTACCAAAACTACCTTATAGTAACTATGTTGAATATCTCTCTGAATCTTCAACTTATCTTCCAACAACCGAGTATAACTTGGTTGGGAACAATTATCAAACACTTGGCAGCACAAACAGCTTCAACGATCAAGGAAAAGCTTTTGGTTTTGGTTTTAAACCGATTGGTTCTTCAAGTAATGACTATGGTATTATGAAGCATGTTGGGTTTTGGAGAAATAATGGAGAAGAAGAAGAAGAAGAAGAAGCAATTACAGCTAAAACTGGAAGTACTCAAAACCTTCTCAATGCTGAGTGTGATGCAACATGGCCAAGTGATTCAGTTGGAGATAAGCATAATGCTTCAAGATTTGATTCAATGGGAATGGTTGGTGATGCTTCACCTTTTTTACTTCCAATTCCAAAATCAGGAAGCAGCTCCACAAGACAGAAAAGTGAGAAATCGCGTTGTACTGACCGTCATCGCAGACAACGTATTGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCAAGAAGGGGGTTGTCAAGCTCAAGCTTACATACTGGACGACATCATCGACTATGTTAAATACTTGCAGAATCAACTAAAGGAACTAAGTGGAAGTAAATTGCAAAGTGACTCAAATGCTATACCTCTAGTTTATCATGAGGGTTATGGGCATTATATAAAGGATCAAATGCTGAACGAGCCTCTTGAAGAGATAATGGGGAAACTAGTTGAAGAACAATCAGCAGCAACGAGTCAGCTACTTGAGAGCAAAGGTCTTATTCTACTGCCTATTGCTTTGGTTGAAGAATTGAACCAAGCTATGCAATTGTTGAACCAAGCTAGCTAG 987 0.386 MEGESNNKDNSSEPISYENEQETSNHEVSEDHQIQNQQSETSVAQWNCVPKLPYSNYVEYLSESSTYLPTTEYNLVGNNYQTLGSTNSFNDQGKAFGFGFKPIGSSSNDYGIMKHVGFWRNNGEEEEEEEAITAKTGSTQNLLNAECDATWPSDSVGDKHNASRFDSMGMVGDASPFLLPIPKSGSSSTRQKSEKSRCTDRHRRQRIADNLKALHELLPNQEGGCQAQAYILDDIIDYVKYLQNQLKELSGSKLQSDSNAIPLVYHEGYGHYIKDQMLNEPLEEIMGKLVEEQSAATSQLLESKGLILLPIALVEELNQAMQLLNQAS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06344 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 313 - -
Vivi1g06344 328 Pfam Helix-loop-helix DNA-binding domain 197 243 IPR011598 GO:0046983
Vivi1g06344 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 255 IPR036638 GO:0046983
Vivi1g06344 328 Gene3D - 184 257 IPR036638 GO:0046983
Vivi1g06344 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 242 IPR011598 GO:0046983
Vivi1g06344 328 MobiDBLite consensus disorder prediction 8 22 - -
Vivi1g06344 328 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g06344 328 CDD bHLH_AtbHLH_like 199 250 IPR045239 -
Vivi1g06344 328 MobiDBLite consensus disorder prediction 181 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06344 Vivi-Chr1 143377483 143379690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06344 187 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 34.641 6.35e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g06344 HLH 8.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06344 - - psat:127092327 505.753