LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06338	ATGTATTCAGGAGTGATGCAAAGAAACGCAGAATGGAGTGTTCTAGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAGCTTCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAGAAGAAATGGAAAAAGTTGTAGGTTAAGATGGGTGAATTATTTGAGACCAGACCTTAAGAAGGGCCAGATAACACAACAAGAGGAAAGCATAATCTTAGAGCTTCATGCTAGATGGGGAAATAGATGGTCAACAATTGCGAGAAGCTTGCCGGGAAGAACAGACAACGAAATAAAGAACTATTGGAGAACTCATTTCAAGAAAAAGACTAAAAAACCGTTCGATGCTGCTGAAAAGGCGAAAAACCGCTCTTTCAAGAGACAGCAACAACAGTTGAAACTGCAACAGCACCAAATTCAGCAGCAACAACAACTGCAATACAATTTGGACATGAAAGGGATTATAGACTTGTTGCTTGATGAAAATGATTACTATAGTGTTCCTTCTACTTCTCAAGAGAGTCAAGAAATGGTTACCATGTATGGAGAAACACCGGAACAACAAGGTTACTCTTACTCTATGGTCAATGGTAATGGTAATATTTATGCTCAAGAGTCTTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAACTTGGAGGATGTTCTTGGAAATTCAATGCAGCCTATGCTACAAGCAAATCCAGCCAATGTGCACAATTTTGTTACTCCCTTTTGTTAA	783	0.3946	MYSGVMQRNAEWSVLEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKKPFDAAEKAKNRSFKRQQQQLKLQQHQIQQQQQLQYNLDMKGIIDLLLDENDYYSVPSTSQESQEMVTMYGETPEQQGYSYSMVNGNGNIYAQESSNEEILWDGLWNLEDVLGNSMQPMLQANPANVHNFVTPFC	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g06338	260	FunFam	Myb transcription factor	22	74	-	-
	Vivi1g06338	260	SUPERFAMILY	Homeodomain-like	19	116	IPR009057	-
	Vivi1g06338	260	CDD	SANT	24	69	IPR001005	-
	Vivi1g06338	260	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Vivi1g06338	260	Gene3D	-	79	123	-	-
	Vivi1g06338	260	Gene3D	-	22	74	-	-
	Vivi1g06338	260	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Vivi1g06338	260	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Vivi1g06338	260	FunFam	MYB-related transcription factor	79	123	-	-
	Vivi1g06338	260	Coils	Coil	139	159	-	-
	Vivi1g06338	260	SMART	sant	74	122	IPR001005	-
	Vivi1g06338	260	SMART	sant	21	71	IPR001005	-
	Vivi1g06338	260	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	16	232	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g06338	260	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	73	IPR017930	-
	Vivi1g06338	260	CDD	SANT	79	120	IPR001005	-
	Vivi1g06338	260	Pfam	Myb-like DNA-binding domain	75	119	IPR001005	-
	Vivi1g06338	260	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06338	Vivi-Chr1	143217586	143218878	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g06338	17	260	MYB Transcription Factor Family	AT3G24310	57.752	6.83e-82	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi1g06338		Myb_DNA-binding	7.9e-17	CL0123