Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06312 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCGGAAATTATGGTGATGTTTTGAACACTTCAGTTATGAGAGAGAAGAACACTGGAAAACCTAGAGGTTTTGGTTTTGTAGTTTTCTCAGATCCTTCTGTTCTCGATAGGGTTCTTGAAGACAAGCATGTTATTGACGGCAGAACGGTTGATGCCAAGAGGGCATTCTCAAGAGAGGACCAACCGATTTCTGTCACTTCAAGAACTGGAAATTCTAATTCTGGTTTGAGTTCAGGTAATGGTGGAAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTACCCCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAGGCATATGGACATGTAACTGATGTTGTAGTCATGTATGATCAGAATACTGGACGACCAAGAGGATTTGGGTTTATTACATTTGATACCGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCTGGTGCAAGTAGTCGAATGATGGGTGGTGCTGGAGGTGGTAGTGGCGGAATGGGTGGTTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTTCGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCAACTTATGGCTCCTCTGCATATAGCGCTGCTGGATATGGGTATGGTTCGGCTGGCAATGGCCTAGGTTATGGTGCAGCTTATGGAGGTTATGGCGGTGCCACTGCTGGTTATGGCGGACCTGCTGCCGCAACGTATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGCTATGGCTCTATGGGTTACGGAAATACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTTCAGCAACTGCAGGTCAGTCCCCCAGTGGAGCTGCTGGATATGGGAATCAAGGTTACGGGTATGGTGGTTATGGTGGCGGGTACGGTGGAAGTGACAGTTCATATGGGAATCCAGGTGTATATGGTGCTGTTGGTGGGCGTACTGGGAGTGCTCCAAGTAGTAATGCTAGTGGTCAGAGTGGTAGTGAACTACAAGGTAGTGGTGGAAGTGGCAACTATATGGGCAGCGGCTATGGAGATGCAAATGGAAATTCTGGTTATGGAAATGCAGCTTGGAGATCTGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGACCCGACAAGCCCAACAACAGTAA 1413 0.4784 MDSDQGKLFIGGISWDTNEEKLKEHFGNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQPISVTSRTGNSNSGLSSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGASSRMMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSDSSRYMQPQSAAGGFPTYGSSAYSAAGYGYGSAGNGLGYGAAYGGYGGATAGYGGPAAATYGNPNVPNAAYAAGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGSATAGQSPSGAAGYGNQGYGYGGYGGGYGGSDSSYGNPGVYGAVGGRTGSAPSSNASGQSGSELQGSGGSGNYMGSGYGDANGNSGYGNAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQTRQAQQQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06312 470 CDD RRM2_Hrp1p 113 190 - -
Vivi1g06312 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vivi1g06312 470 MobiDBLite consensus disorder prediction 84 107 - -
Vivi1g06312 470 MobiDBLite consensus disorder prediction 388 449 - -
Vivi1g06312 470 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Vivi1g06312 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Vivi1g06312 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vivi1g06312 470 MobiDBLite consensus disorder prediction 386 470 - -
Vivi1g06312 470 Gene3D - 4 87 IPR012677 -
Vivi1g06312 470 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vivi1g06312 470 Gene3D - 105 235 IPR012677 -
Vivi1g06312 470 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Vivi1g06312 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vivi1g06312 470 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Vivi1g06312 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vivi1g06312 470 SMART rrm1_1 113 185 IPR000504 GO:0003723
Vivi1g06312 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 470 - -
Vivi1g06312 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Vivi1g06312 470 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06312 Vivi-Chr1 142719719 142722852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06312 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.000 2.92e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06312 1 142719719 142722852 Vivi1g06312 1 142719719 142722852 ECH